View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19145_low_4 (Length: 644)
Name: NF19145_low_4
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_4 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 21 - 562
Target Start/End: Complemental strand, 33066758 - 33066221
Alignment:
| Q |
21 |
gttccagcaccacaaccaccgccgcggtcctttgcacaagcacttgttgcatcgcacgtcaaagctaccaacgacaatataccacaacctacaatctagg |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| | |
|
|
| T |
33066758 |
gttccatcaccacaaccaccgccgcggtcctttgcacaagcacttgttgcatcgcacgacaaagctaccaatgacaatatgccacaacctacaatctgtg |
33066659 |
T |
|
| Q |
121 |
gtgagannnnnnnnnnnnattcctaatactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaag |
220 |
Q |
| |
|
| |||| |||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
33066658 |
gggagactctctct----attcgtattactcagccaatttatgaacagggg-tcaatgtgtgtaagagaaacattcgtggaaggttggttctaaacaaag |
33066564 |
T |
|
| Q |
221 |
gagataaaccctatgcttcgaaggaaattgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggctttta |
320 |
Q |
| |
|
|| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
33066563 |
gacataaaccctatgcgtagaaggaaattgaagacaaacttcggaaacaatggaagactattgcaccttggtcgttgctatctttaggtaggggctttta |
33066464 |
T |
|
| Q |
321 |
tgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtg |
420 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33066463 |
tgaattcttttttgccactgaatctgatttgcaaattgtttgggcaatgggaaccgtgaacttgaagccgggggtgttacgtttatttgaatggtcagtg |
33066364 |
T |
|
| Q |
421 |
gattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaa |
519 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| || |||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066363 |
gattttgatatgcataatcatagagatacacatacgcaagtacggattcgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaa |
33066264 |
T |
|
| Q |
520 |
ttgctagtgtggttggcatgccgctagttcttgacaatgcaac |
562 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
33066263 |
ttgctagtgtggttggcacgccgctcgttgttgacaatgcaac |
33066221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 147 - 559
Target Start/End: Complemental strand, 21493582 - 21493169
Alignment:
| Q |
147 |
tactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaa |
246 |
Q |
| |
|
|||||||||| | || ||| |||||||||| | |||||||||||||||||||| ||| |||| ||||||||||| || || || ||||| ||||||||| |
|
|
| T |
21493582 |
tactcagccattgtacgaaaagggggtcaacttttgtaagagaaaccttcgtgggaggctggtcctcaacaaaggggacaagccgtatgcatcgaaggaa |
21493483 |
T |
|
| Q |
247 |
attgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctg |
346 |
Q |
| |
|
|| || ||||||||| | ||||||||||||||| ||||||||||| | ||||| ||| |||||| |||||| ||||||||| |||||| || |||||||| |
|
|
| T |
21493482 |
atcgaggacaagcttagaaaacaatggaagactactgcaccttggtctttgctttctctaggtaggggcttctatgaattcgtttttgccaatgaatctg |
21493383 |
T |
|
| Q |
347 |
atttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaa |
446 |
Q |
| |
|
|| |||||| ||||||||||||||||||| | ||||||||||| | ||| ||||| ||||||||||| | ||||| ||||| |||||||| |||||||| |
|
|
| T |
21493382 |
atatgcaaaatgtttgggcaatgggaactttaaacttgaagccaggggttttacgactatttgaatggactgtggactttgatatgcataaccagagaaa |
21493283 |
T |
|
| Q |
447 |
taca-atgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgcta |
545 |
Q |
| |
|
||| ||||| ||||||| |||||| | ||||||||||||||||||||||||||||| | || | || || |||||||||| |||||||| ||||| | |
|
|
| T |
21493282 |
cacacatgcgtaagtatggatccgacttatggcactgccacaagaatattggatggagcagaccttgcgagagattgctagtgcggttggcacgccgcaa |
21493183 |
T |
|
| Q |
546 |
gttcttgacaatgc |
559 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
21493182 |
gtccttgacaatgc |
21493169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 641
Target Start/End: Complemental strand, 33066233 - 33066176
Alignment:
| Q |
584 |
ttgacaatgcaaccttgaaaagactttttggacattatgcacgtatattcttcgacat |
641 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
33066233 |
ttgacaatgcaaccttgtaaagactttttggacactatgcacgtatattagtcgacat |
33066176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Complemental strand, 28975917 - 28975464
Alignment:
| Q |
21 |
gttccagcaccacaaccaccgccgcggtcctttgcacaagcacttgttgcatcgcacgtcaaagctaccaacgacaatataccacaacctacaatctagg |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28975917 |
gttccagcaccacaaccaccaccgcggtcctttgcacaagcacttgttgcatcgcatggcaaagctaccaacgacaatataccacaacctacaatccgtg |
28975818 |
T |
|
| Q |
121 |
gtgagannnnnnnnnnnn----attcctaatactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaac |
216 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975817 |
gtgagactctctctctctctctattcgtattactcagccaatttatgaatagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaac |
28975718 |
T |
|
| Q |
217 |
aaaggagataaaccctatgcttcgaaggaaattgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28975717 |
aaaggagataaaccctatgcttcgaaggaaattgaagacaagcttcggaaacaatggaagactgctgcaccttggaggttgctatctttaggtaagggct |
28975618 |
T |
|
| Q |
317 |
tttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975617 |
tttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtc |
28975518 |
T |
|
| Q |
417 |
agtggattttgaaatgcataatcagagaaatacaatgcgcaagtatgcatccga |
470 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28975517 |
agtggattttgatatgcataatcagagaaatacaatgcgcaagtatgcatccga |
28975464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 160 - 562
Target Start/End: Original strand, 29041402 - 29041802
Alignment:
| Q |
160 |
tatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaaattgaagacaagc |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||| ||||| || || ||||| |||||||| | ||| | |
|
|
| T |
29041402 |
tatgaaaagggggtcaatgtgtgtaagagaaatctccgtggaagattggttctcaacaaatgagacaaaccttacgcatcgaaagaaattgagggcaaac |
29041501 |
T |
|
| Q |
260 |
ttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgt |
359 |
Q |
| |
|
|| ||||| |||||||||||| ||||||||||| || ||| |||||| ||| | ||| ||||||||||||| || |||||||||| |||||| ||| |
|
|
| T |
29041502 |
ttaaaaaacagtggaagactgct---ccttggacgttactgtctctaggtaggggttattaggaattcttttttgccaatgaatctgatatgcaaactgt |
29041598 |
T |
|
| Q |
360 |
ttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaa |
458 |
Q |
| |
|
||||||| ||||||| | || ||||| |||| ||| ||||| |||||||||||| | || |||||||| ||| |||| || || || || ||| |||| |
|
|
| T |
29041599 |
ttgggcagtgggaacgataaatttgaaaccgggggttttacgcttatttgaatggactgtcgattttgatatgtataaacaaaggaacactcatgtgcaa |
29041698 |
T |
|
| Q |
459 |
gtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatg |
558 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
29041699 |
gtatggatccgattgatggcactgccacaagaatatcagatggagcagactctacgtgaaattgctagtgcggttggcacgccgctagttcttgacaatg |
29041798 |
T |
|
| Q |
559 |
caac |
562 |
Q |
| |
|
|||| |
|
|
| T |
29041799 |
caac |
29041802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 630
Target Start/End: Original strand, 29041789 - 29041836
Alignment:
| Q |
583 |
cttgacaatgcaaccttgaaaagactttttggacattatgcacgtata |
630 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
29041789 |
cttgacaatgcaacactgaaaagactttttggacactatgcccgtata |
29041836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 504
Target Start/End: Complemental strand, 10304793 - 10304313
Alignment:
| Q |
21 |
gttccagcaccacaaccaccgccgcggtcctttgcacaagcacttgttgcatcgcacgtcaaagctaccaacgacaatataccacaacctacaatctagg |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||| |||| | ||||||||||||||| | |
|
|
| T |
10304793 |
gttccagcaccacaaccaccgtcgcggtcctttgcacaagcacttgtcgcatcgcacggcaaagctacctacggcaatctgccacaacctacaatccgtg |
10304694 |
T |
|
| Q |
121 |
gtgagannnnnnnnnnnnattcctaatactcagccaatttatgaacag-ggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaa |
219 |
Q |
| |
|
|||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10304693 |
gtgagactctctct----attcgtattactcggccaatttatgaacacaggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctaaacaaa |
10304598 |
T |
|
| Q |
220 |
--ggagataaaccctatgcttcgaaggaaattgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggctt |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10304597 |
aaggagataaaccctatgcgtcgaaggaaattgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaggggctt |
10304498 |
T |
|
| Q |
318 |
ttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtca |
417 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
10304497 |
ttatgaattcttttttgccattgaat---atttgcaaattgtttgggcaatgggaactgtgaacttgaagccgagggtgttacgattatttgaatggtca |
10304401 |
T |
|
| Q |
418 |
gtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaac |
504 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10304400 |
atagattttgatatgcataatcagagaaatacacatgcgcaagtatggatccgattcatggcactgccacaagaatattggatggaac |
10304313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 147 - 504
Target Start/End: Complemental strand, 10288956 - 10288597
Alignment:
| Q |
147 |
tactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaa--ggagataaaccctatgcttcgaagg |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| || |||| |
|
|
| T |
10288956 |
tactcagccaatttatgaacagggggtcaatgtgtgtaagagaaacctttgtggaaggttggttctaaacaaaaaggagataaaccctatgcgtcaaagg |
10288857 |
T |
|
| Q |
245 |
aaattgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatc |
344 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
10288856 |
aaattgaagacaagcttcgaaaacaatggaatacta-tgcaccttggacgttgctatctttaggtaggggcttttatgaattcttttttgccactgaatc |
10288758 |
T |
|
| Q |
345 |
tgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagaga |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
10288757 |
tgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggggatgttacgattatttgaatggtcagtggatattgatatgcataatcagaga |
10288658 |
T |
|
| Q |
445 |
aataca-atgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaac |
504 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10288657 |
aatacacatgcgcaagtatggatccgattgatggcactgccacaagaatattggatggaac |
10288597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 160 - 562
Target Start/End: Original strand, 20950591 - 20950994
Alignment:
| Q |
160 |
tatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaaattgaagacaagc |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||| || ||||||||||||| ||||||| |
|
|
| T |
20950591 |
tatgaaaagggggtcaatgtgtgtaagagaaatatccgtggaagattggttctcaacaaaggagacaaaccctacgcgtcgaaggaaattgtggacaagc |
20950690 |
T |
|
| Q |
260 |
ttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgt |
359 |
Q |
| |
|
|| |||||| ||||||||| |||| ||||||||||| |||||| |||| | ||| | |||| |||||||||||| | |||||||||| |||||| ||| |
|
|
| T |
20950691 |
ttaagaaacagtggaagactactgctccttggacgttactatctctaggcaggggttattataaattcttttttgctaatgaatctgatatgcaaactgt |
20950790 |
T |
|
| Q |
360 |
ttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaata-caatgcgcaa |
458 |
Q |
| |
|
||||||| ||||||| | | ||||| ||| ||| ||||| ||||||||| || || |||||||| ||| |||||||||| || | | ||| |||| |
|
|
| T |
20950791 |
ttgggcagtgggaacgatagatttgaaatcgggggttttacgcttatttgaacggagtgtcgattttgatatgtataatcagaggaacacccatgtgcaa |
20950890 |
T |
|
| Q |
459 |
gtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatg |
558 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20950891 |
gtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctagtgtggttggcacgccgctagttcttgacaatg |
20950990 |
T |
|
| Q |
559 |
caac |
562 |
Q |
| |
|
|||| |
|
|
| T |
20950991 |
caac |
20950994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 10289064 - 10289007
Alignment:
| Q |
21 |
gttccagcaccacaaccaccgccgcggtcctttgcacaagcacttgttgcatcgcacg |
78 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
10289064 |
gttccagcaccacaaccgccgccgcggtcccttgcacaagcacttgtcgcatcgcacg |
10289007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 10288599 - 10288565
Alignment:
| Q |
594 |
aaccttgaaaagactttttggacattatgcacgta |
628 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
10288599 |
aaccttgaaaagactttttggacactatgcacgta |
10288565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 10304315 - 10304281
Alignment:
| Q |
594 |
aaccttgaaaagactttttggacattatgcacgta |
628 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
10304315 |
aaccttgaaaagactttttggacactatgcacgta |
10304281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 623
Target Start/End: Original strand, 20950981 - 20951021
Alignment:
| Q |
583 |
cttgacaatgcaaccttgaaaagactttttggacattatgc |
623 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
20950981 |
cttgacaatgcaacactgaaaagactttttggacactatgc |
20951021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 559
Target Start/End: Original strand, 9282794 - 9283322
Alignment:
| Q |
24 |
ccagcaccacaaccaccgccgcggtcctttgcacaagcacttgttgcatcgcacgtcaaagctaccaacgacaatataccacaacctacaatctagggtg |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| || || || ||| | || |||||||||| | ||| |
|
|
| T |
9282794 |
ccagcaccacaaccaccaccgcggtcctttgcacaagcacttgttgcatcgcacagccaagccactaatgataatctgccgcaacctacaacccgttgtg |
9282893 |
T |
|
| Q |
124 |
agannnnnnnnnnnnattcctaatactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggag |
223 |
Q |
| |
|
|| |||| || | ||||| || | ||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
9282894 |
ag----gctctctccattcgtactgctcagtcagtgtattaacagggggtcaatgtgtgtaagagaaacctttgtggaaggttggttcttaacaaaggat |
9282989 |
T |
|
| Q |
224 |
ataaaccctatgcttcgaaggaaattgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatga |
323 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9282990 |
-taaaccctatacgtcgaaggaaattgaggacaagcttcggaaacaatggaagactgctacaccttggacgttgctatctttaggtaggggcttttatga |
9283088 |
T |
|
| Q |
324 |
attcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggat |
423 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9283089 |
cttcttttttgccactaa---tgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccgggggtgttacgtttatttgaatggtcggtggat |
9283185 |
T |
|
| Q |
424 |
tttgaaatgcataatcagagaaatac-aatgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattg |
522 |
Q |
| |
|
||| | ||||||||||| || || || | || |||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||| |
|
|
| T |
9283186 |
tttaatatgcataatcataggaacactcaagcacaagtatggatccgattgatggcactgccacaacaatattgaatgaaacgtactctatcggaaattg |
9283285 |
T |
|
| Q |
523 |
ctagtgtggttggcatgccgctagttcttgacaatgc |
559 |
Q |
| |
|
| |||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
9283286 |
ccagtgcggttggcacgccactagttcttgacaatgc |
9283322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 147 - 562
Target Start/End: Complemental strand, 38501666 - 38501250
Alignment:
| Q |
147 |
tactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaa |
246 |
Q |
| |
|
|||||| ||| | |||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
38501666 |
tactcaaccagtgtatgaaaagggggtcaatgtgtgtaagagaaatctctgtggaagattggttctcaacaaaggagacaaaccctacgcgtcgaaggaa |
38501567 |
T |
|
| Q |
247 |
attgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctg |
346 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||||| ||||||||||| |||||| |||||| ||| ||||| ||||||||||||| | |||||||| |
|
|
| T |
38501566 |
attgaggacaagcttaagaaacagtggaagactgctgctccttggacgttactatctctaggtaggggtttttacgaattcttttttgctaatgaatctg |
38501467 |
T |
|
| Q |
347 |
atttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaa |
446 |
Q |
| |
|
|| |||||| |||||||||| |||||||| | || ||||| |||| ||| ||||| |||||||||||| | || |||||||| ||| |||||||||| || |
|
|
| T |
38501466 |
atatgcaaactgtttgggcagtgggaactataaatttgaaaccgggggttttacgcttatttgaatggactgtcgattttgatatgtataatcagaggaa |
38501367 |
T |
|
| Q |
447 |
ta-caatgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgcta |
545 |
Q |
| |
|
| | ||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
38501366 |
cacccatgcgcaggtatggatccgattgatggcattgccacaagaatattggatggagcagactctacgtgaaattgctagtgcggttggcacgccgcta |
38501267 |
T |
|
| Q |
546 |
gttcttgacaatgcaac |
562 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38501266 |
gttcttgacaatgcaac |
38501250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 630
Target Start/End: Complemental strand, 38501263 - 38501216
Alignment:
| Q |
583 |
cttgacaatgcaaccttgaaaagactttttggacattatgcacgtata |
630 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
38501263 |
cttgacaatgcaacactgaaaagactttttggacactatgcccgtata |
38501216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 629
Target Start/End: Original strand, 9283312 - 9283358
Alignment:
| Q |
583 |
cttgacaatgcaaccttgaaaagactttttggacattatgcacgtat |
629 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||| |||| |
|
|
| T |
9283312 |
cttgacaatgcgacattgaaaagactttttggacactatgcatgtat |
9283358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 147 - 562
Target Start/End: Complemental strand, 5193 - 4782
Alignment:
| Q |
147 |
tactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaa |
246 |
Q |
| |
|
||||||||| | |||||| ||||||||| ||||||||||||||| || |||||||| |||||| ||||||||||||| |||||||| || ||||||||| |
|
|
| T |
5193 |
tactcagccggtgtatgaaaagggggtcagtgtgtgtaagagaaatctccgtggaagattggttgtcaacaaaggagacaaaccctacgcgtcgaaggaa |
5094 |
T |
|
| Q |
247 |
attgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctg |
346 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||| ||| ||||||||||| |||||| |||||| ||| | ||| ||||||||||||| | ||||||| |
|
|
| T |
5093 |
attgaggacaagcttaagaaacagtggaagactgttgctccttggacgttactatctctaggtaggggttattacgaattcttttttgctaatgaatctt |
4994 |
T |
|
| Q |
347 |
atttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaa |
446 |
Q |
| |
|
|| ||||||||||||||||| ||||||| | || ||||| |||| ||| ||||| |||||||||||| | | ||||| ||| |||||||||| || |
|
|
| T |
4993 |
atatgcaaattgtttgggcagtgggaacgataaatttgaaaccgggggttttacgcttatttgaatggactg-----tttgatatgtataatcagaggaa |
4899 |
T |
|
| Q |
447 |
ta-caatgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgcta |
545 |
Q |
| |
|
| | |||| |||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4898 |
cacccatgcacaagtatggatccaattgatggcactgccacaagaatattggatggagcagactctacgtgaaattgctagtgcggttggcacgccgcta |
4799 |
T |
|
| Q |
546 |
gttcttgacaatgcaac |
562 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4798 |
gttcttgacaatgcaac |
4782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 170; Significance: 7e-91; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 147 - 559
Target Start/End: Complemental strand, 47022 - 46609
Alignment:
| Q |
147 |
tactcagccaatttatgaacagggggtcaatgtgtgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaa |
246 |
Q |
| |
|
|||||||||| | |||||| |||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||| || || ||||| ||||||||| |
|
|
| T |
47022 |
tactcagccattgtatgaaaagggggtcaacttctgtaagataaaccttcgtggaaggttggtcctcagcaaaggagacaagccgtatgcatcgaaggaa |
46923 |
T |
|
| Q |
247 |
attgaagacaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctg |
346 |
Q |
| |
|
|| | ||||||||| | ||||||||||||||| ||||| |||| | ||||| ||| |||||| |||||| |||||||||||||||| || |||||||| |
|
|
| T |
46922 |
atcaaggacaagcttagaaaacaatggaagactactgcagcttgatcattgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctg |
46823 |
T |
|
| Q |
347 |
atttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaa |
446 |
Q |
| |
|
|| |||||| ||||||||||||||||||| | ||||||||||||| ||| ||||| ||||||||||| | | ||||||||| |||||||| |||||||| |
|
|
| T |
46822 |
atatgcaaaatgtttgggcaatgggaactttaaacttgaagccgggggttttacgactatttgaatggactgcggattttgatatgcataaccagagaaa |
46723 |
T |
|
| Q |
447 |
taca-atgcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgcta |
545 |
Q |
| |
|
||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||| || | || || |||||||||| |||||||| ||||| | |
|
|
| T |
46722 |
cacacatgcgcaagtatggatccgacttatggcactgccacaagaatattggatggagaagaccttgcgagatattgctagtgcggttggcacgccgcaa |
46623 |
T |
|
| Q |
546 |
gttcttgacaatgc |
559 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
46622 |
gtccttgacaatgc |
46609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 254 - 562
Target Start/End: Original strand, 20380704 - 20381013
Alignment:
| Q |
254 |
acaagcttcggaaacaatggaagactgctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgca |
353 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||| ||| ||||| ||||||||||||| | |||||||||| |||| |
|
|
| T |
20380704 |
acaagcttaagaaacaatggaagactgctgctccttggacgttactatctctaggtaggggtttttacgaattcttttttgctaatgaatctgatatgca |
20380803 |
T |
|
| Q |
354 |
aattgtttgggcaatgggaactgtgaacttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-at |
452 |
Q |
| |
|
|| | |||||||| ||||||| | || ||||| |||| ||| ||||| |||||||||||| | || |||||||| ||| |||||||||| || || || |
|
|
| T |
20380804 |
aactatttgggcagtgggaacgataaatttgaaaccgggggttttacgcttatttgaatggactgtcgattttgatatgtataatcagaggaacacccat |
20380903 |
T |
|
| Q |
453 |
gcgcaagtatgcatccgattgatggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttg |
552 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
20380904 |
gcgcaggtatggatccgattgatggcactgccacaagaatattggatggagcagactctacgtgaaatttctagtgcggttggcacgccgctagttcttg |
20381003 |
T |
|
| Q |
553 |
acaatgcaac |
562 |
Q |
| |
|
|||||||||| |
|
|
| T |
20381004 |
acaatgcaac |
20381013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 181 - 507
Target Start/End: Complemental strand, 13582066 - 13581739
Alignment:
| Q |
181 |
tgtaagagaaaccttcgtggaaggttggttctcaacaaaggagataaaccctatgcttcgaaggaaattgaagacaagcttcggaaacaatggaagactg |
280 |
Q |
| |
|
||||||||||||||||| |||||||| || || ||||||||||||||||| || | || || |||||||||| || | | |||||| |||||||| | |
|
|
| T |
13582066 |
tgtaagagaaaccttcgaggaaggtttgtacttaacaaaggagataaaccgtacacatcaaaagaaattgaagcgaaattacagaaacattggaagaccg |
13581967 |
T |
|
| Q |
281 |
ctgcaccttggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaa |
380 |
Q |
| |
|
||||||| ||||| ||| |||| |||||| ||| |||||||||||||||||| ||||||||||| ||| |||||||| |||||||| | || |
|
|
| T |
13581966 |
ctgcaccatggactttgtcatctctaggtaggggtttttatgaattcttttttaatttagaatctgatttacaagcggtttgggcgatgggaacattaaa |
13581867 |
T |
|
| Q |
381 |
cttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggca |
479 |
Q |
| |
|
||||| |||| | | |||||||||||||||||| || || ||| | ||||||||||| ||||| ||| |||| ||||| || || |||| |||| | |
|
|
| T |
13581866 |
tttgaaaccggggctattacgtttatttgaatgggcaaaagactttaatatgcataatcatagaaacacacatgctcaagtctggatatgattaatggaa |
13581767 |
T |
|
| Q |
480 |
ctgccacaagaatattggatggaacgta |
507 |
Q |
| |
|
| ||||| |||||||||| |||||||| |
|
|
| T |
13581766 |
ttaccacaggaatattggaaggaacgta |
13581739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 547
Target Start/End: Original strand, 27504709 - 27504781
Alignment:
| Q |
475 |
tggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagt |
547 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| || || ||||| || |||| |||||||| ||||||||| |
|
|
| T |
27504709 |
tggcactgccgcaagaatattggatggaacatacacttcgggaaatcgcaagtgcggttggcacgccgctagt |
27504781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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