View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_low_40 (Length: 239)
Name: NF19145_low_40
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5687383 - 5687165
Alignment:
| Q |
19 |
aatcatccaaagcatcaaaaggtaaaaatactatcatacttcatcattata----caacgagagatgggctcaaacaatgcattatatcaatcaaggctc |
114 |
Q |
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| T |
5687383 |
aatcatccaaagcatcaaaaggtaaaaatactatcatacttcatcattatatatacaacgagagatgggctcaaacaatgcattatatcaatcaaggctc |
5687284 |
T |
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| Q |
115 |
aaataacatttcttcaacnnnnnnnnnnnnnnnnnngagtctcaaatgacattacattcacatcttgaacataatctggtcctaccatttctaagaat-- |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
5687283 |
aaataacatttcttcaac--------aacaaaaaaagagtctcaaatgacattacattcacatcttgaacacaatctggtcctaccatttccaagaatac |
5687192 |
T |
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| Q |
213 |
atttatcttatctatttattgtgatcc |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5687191 |
atttatcttatctatttattgtgatcc |
5687165 |
T |
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