View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19145_low_42 (Length: 237)
Name: NF19145_low_42
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29712637 - 29712413
Alignment:
| Q |
1 |
tgtctctgtctatggaatccatccactggagttcacaaatatataccaaactctcttattgattgcaatttagatgcatatcatttatatggttttgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29712637 |
tgtctctgtctatggaatccatccactggagttcacaaatatataccaaattctcttattgattgcaatttagatgcatatcatttatatggttttgggt |
29712538 |
T |
|
| Q |
101 |
atgacgagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29712537 |
atgacgagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctga |
29712438 |
T |
|
| Q |
201 |
tgcgtggaacgaaattgagggtgat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29712437 |
tgcgtggaacgaaattgagggtgat |
29712413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 29688023 - 29688240
Alignment:
| Q |
9 |
tctatggaatccatccactggagttcacaaatatataccaa--act-ctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgac |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||| | | ||||| ||| || ||||||||| ||||||||| ||| | |||| ||||||||||||||||| |
|
|
| T |
29688023 |
tctatggaatccatccaccggagttcacagacaaataccctttactactgttattgattccaatttagaagcaaagtatttctatggttttgggtatgat |
29688122 |
T |
|
| Q |
106 |
gagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgt |
205 |
Q |
| |
|
||||| | ||||||||| | || ||||| |||| |||||||| | ||| || | |||| ||| ||| |||||||||||||| |||||| || ||| |
|
|
| T |
29688123 |
gagtctactgatgattacctggttctttcaatgtgctatgatccgagtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgt |
29688222 |
T |
|
| Q |
206 |
ggaacgaaattgagggtg |
223 |
Q |
| |
|
|||| ||||| ||||||| |
|
|
| T |
29688223 |
ggaaggaaatggagggtg |
29688240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 29696173 - 29696261
Alignment:
| Q |
58 |
attgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatga |
146 |
Q |
| |
|
||||||| |||| ||||||| || |||| ||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| ||||| |
|
|
| T |
29696173 |
attgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga |
29696261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 47452068 - 47451954
Alignment:
| Q |
11 |
tatggaatccatccactggagttcacaaatatataccaaactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||| | ||| || |||| |||||||| || |||| ||| | |||||||||||||||| |
|
|
| T |
47452068 |
tatggaatccatccactggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagtt |
47451969 |
T |
|
| Q |
111 |
aagggatgattactt |
125 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
47451968 |
aacagatgattactt |
47451954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 24340475 - 24340510
Alignment:
| Q |
182 |
ttttctcattgagagctgatgcgtggaacgaaattg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24340475 |
ttttctcattgagagctaatgcgtggaacgaaattg |
24340510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 24352840 - 24352875
Alignment:
| Q |
182 |
ttttctcattgagagctgatgcgtggaacgaaattg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24352840 |
ttttctcattgagagctaatgcgtggaacgaaattg |
24352875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 24310163 - 24310205
Alignment:
| Q |
83 |
atttatatggttttgggtatgacgagtcaagggatgattactt |
125 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
24310163 |
atttctatggttttggttatgacgagtcaagagatgattactt |
24310205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 48852757 - 48852797
Alignment:
| Q |
182 |
ttttctcattgagagctgatgcgtggaacgaaattgagggt |
222 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
48852757 |
ttttctcattgagagctaatgcatggaaagaaattgagggt |
48852797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University