View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_43 (Length: 227)

Name: NF19145_low_43
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_43
NF19145_low_43
[»] chr4 (23 HSPs)
chr4 (1-208)||(48852500-48852707)
chr4 (29-131)||(48891326-48891428)
chr4 (86-178)||(48898586-48898678)
chr4 (86-191)||(37827110-37827215)
chr4 (86-178)||(49044312-49044404)
chr4 (80-135)||(48170690-48170745)
chr4 (93-188)||(48863086-48863181)
chr4 (87-178)||(50250907-50250998)
chr4 (90-135)||(48870452-48870497)
chr4 (86-135)||(48875756-48875805)
chr4 (90-135)||(48886138-48886183)
chr4 (95-177)||(7822840-7822922)
chr4 (80-134)||(33133924-33133978)
chr4 (89-135)||(48705478-48705524)
chr4 (11-51)||(49048623-49048663)
chr4 (86-137)||(49048700-49048751)
chr4 (92-131)||(50672412-50672451)
chr4 (95-177)||(7800508-7800590)
chr4 (95-177)||(7813351-7813433)
chr4 (77-131)||(48156525-48156579)
chr4 (7-45)||(49041210-49041248)
chr4 (86-136)||(49041271-49041321)
chr4 (86-174)||(50668923-50669011)
[»] chr6 (3 HSPs)
chr6 (11-178)||(21015673-21015840)
chr6 (77-188)||(21979757-21979868)
chr6 (7-49)||(14197710-14197752)
[»] chr5 (3 HSPs)
chr5 (78-135)||(42562439-42562496)
chr5 (94-132)||(29261163-29261201)
chr5 (95-137)||(29688019-29688061)
[»] chr3 (3 HSPs)
chr3 (86-178)||(47452023-47452115)
chr3 (92-178)||(11015641-11015727)
chr3 (7-72)||(11024574-11024639)
[»] chr1 (1 HSPs)
chr1 (93-178)||(24310050-24310135)
[»] chr7 (2 HSPs)
chr7 (94-132)||(30120435-30120473)
chr7 (10-131)||(48883712-48883833)
[»] chr8 (1 HSPs)
chr8 (20-165)||(4031960-4032105)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 48852707 - 48852500
Alignment:
Q  1 aactaacaagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852707 aactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatt 48852608  T
Q  101 tgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaagcattaatatgaatgtaaagat 200  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48852607 tgtttgtgaactccggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctacatgaagcattaatatgaatgtaaagat 48852508  T
Q  201 aagattgg 208  Q
    ||||||||    
T  48852507 aagattgg 48852500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 48891428 - 48891326
Alignment:
Q  29 tcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattcc 128  Q
    ||||||| |||||||||||||||||| |||||  || ||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||    
T  48891428 tcatacctaaaaccatatagataacataaatagttggcatctaacctcgaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattcc 48891329  T
Q  129 ata 131  Q
    |||    
T  48891328 ata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 48898678 - 48898586
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||  || |||||  ||   || |||| |||||||||||||||||||    
T  48898678 ggagacaaaggtatttgtttgtgagctccggtggatggattccataggtggatatctgagcaagtatgcaaaagtataaagcctctacatgaa 48898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 37827110 - 37827215
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaagcattaa 185  Q
    |||||||| |||||||||||||||| ||| || ||||||||||||| ||| || | | |||||||||| ||||||| ||| ||||||| |||| | ||||    
T  37827110 ggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaa 37827209  T
Q  186 tatgaa 191  Q
    | ||||    
T  37827210 tttgaa 37827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 49044312 - 49044404
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| ||| |   || || ||| || ||||||||||| ||||||||||||    
T  49044312 ggagacaaaggtatttgtttgtgaactctagtggatggattccatagataagttgttgcagcacgatgcaaaaatataaaccctctacatgaa 49044404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 48170690 - 48170745
Alignment:
Q  80 tcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggta 135  Q
    ||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  48170690 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggta 48170745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 48863181 - 48863086
Alignment:
Q  93 aaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaagcattaatat 188  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||| || | ||||| || ||  ||||  |||||||||||| ||||||| |||||||    
T  48863181 aaggtatttgtttctgagctccggtggatggattccataggtagatgtttgaagcacagttgaaaacaataaagcctctagatgaagctttaatat 48863086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 50250907 - 50250998
Alignment:
Q  87 gagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    ||||||||||||||||| ||||||  ||||| ||||||||||||||||| |    |||| ||| ||| ||||||||||| ||||||||||||    
T  50250907 gagacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaa 50250998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 48870497 - 48870452
Alignment:
Q  90 acaaaggtatttgtttgtgaactccggtagatggattccataggta 135  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggta 48870452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 48875805 - 48875756
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggta 135  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  48875805 ggagacataggtatttgtttgtgaaatccggtggatggattccataggta 48875756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 48886183 - 48886138
Alignment:
Q  90 acaaaggtatttgtttgtgaactccggtagatggattccataggta 135  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggta 48886138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 7822922 - 7822840
Alignment:
Q  95 ggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatga 177  Q
    ||||||||||| | || ||| ||||||||||||||||||||||| |||| | ||||||  ||||||| ||| |||| ||||||    
T  7822922 ggtatttgtttcttaaatccagtagatggattccataggtaaatgtctggaaaacggtataaaaataaaaaccctccacatga 7822840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 33133924 - 33133978
Alignment:
Q  80 tcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggt 134  Q
    ||||| |||||||||||||||||||| ||||||| |||  |||||||||||||||    
T  33133924 tcaattggagacaaaggtatttgtttatgaactcgggtgaatggattccataggt 33133978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 48705478 - 48705524
Alignment:
Q  89 gacaaaggtatttgtttgtgaactccggtagatggattccataggta 135  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||    
T  48705478 gacaaaggtatttgtttgtgaaatccagtagatggattccacaggta 48705524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 49048623 - 49048663
Alignment:
Q  11 taatcatcggttgacgggtcatacccaaaaccatatagata 51  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  49048623 taatcatctgttgatgggtcatacccaaaaccatatagata 49048663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 49048700 - 49048751
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaa 137  Q
    |||||||||||||||||| |||||||||  || ||||||||||| |||||||    
T  49048700 ggagacaaaggtatttgtctgtgaactctagtggatggattccaaaggtaaa 49048751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 50672451 - 50672412
Alignment:
Q  92 aaaggtatttgtttgtgaactccggtagatggattccata 131  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  50672451 aaaggtatttgtttgtgaactcctgtggatggattccata 50672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 7800590 - 7800508
Alignment:
Q  95 ggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatga 177  Q
    ||||||||||| | || ||| |||||||||||||| |||||||| |||| | ||||||  ||||||| ||| |||| ||||||    
T  7800590 ggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatga 7800508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 7813433 - 7813351
Alignment:
Q  95 ggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatga 177  Q
    ||||||||||| | || ||| |||||||||||||| |||||||| |||| | ||||||  ||||||| ||| |||| ||||||    
T  7813433 ggtatttgtttcttaaatccagtagatggattccacaggtaaatgtctggaaaacggtataaaaataaaaaccctccacatga 7813351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 48156525 - 48156579
Alignment:
Q  77 gaatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccata 131  Q
    |||||| | |||||||||||||||||||||| |||||  || |||||||||||||    
T  48156525 gaatcattaggagacaaaggtatttgtttgtaaactctagttgatggattccata 48156579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 49041210 - 49041248
Alignment:
Q  7 caagtaatcatcggttgacgggtcatacccaaaaccata 45  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  49041210 caagtaatcatctgttgacggatcatacccaaaaccata 49041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 49041271 - 49041321
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaa 136  Q
    |||| |||||||||| |||||||| ||||||| ||||| ||||||||||||    
T  49041271 ggaggcaaaggtattagtttgtgagctccggtggatgggttccataggtaa 49041321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 50669011 - 50668923
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctaca 174  Q
    |||||||| ||||| ||||| |||| || ||| ||||||||||||| | | || |  |||||||  || ||||||||||||||||||||    
T  50669011 ggagacaatggtatctgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctaca 50668923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 21015840 - 21015673
Alignment:
Q  11 taatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaa 110  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| | |||  || || ||||    |||  | | |||||||||||||||||||||||||    
T  21015840 taatcatctgttgatgggtcatacccaaaaccatatagataacatatataattgacacctaaatatgaactattaggagacaaaggtatttgtttgtgaa 21015741  T
Q  111 ctccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    |||  || ||||||||||||||||| || | ||||  | |||| ||||||||||| ||||||||||||    
T  21015740 ctctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaa 21015673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 21979757 - 21979868
Alignment:
Q  77 gaatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggta-aatctctgaagaacggtgaaaaaatataaagcctctacat 175  Q
    |||||||  |||||||||||||||||||| |||| ||| ||||| || ||||||| ||| | ||| |||| ||| ||| ||||||||||| |||||||||    
T  21979757 gaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtct-tgaaaaacagtggaaaaatataaatcctctacat 21979855  T
Q  176 gaagcattaatat 188  Q
    ||| | |||||||    
T  21979856 gaacctttaatat 21979868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 14197710 - 14197752
Alignment:
Q  7 caagtaatcatcggttgacgggtcatacccaaaaccatataga 49  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||    
T  14197710 caagtaatcattggttgacaggtcatacccaaagccatataga 14197752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 42562439 - 42562496
Alignment:
Q  78 aatcaatgggagacaaaggtatttgtttgtgaactccggtagatggattccataggta 135  Q
    ||||||| ||||||||||||||||||||||||  |||| | |||||||||||||||||    
T  42562439 aatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggta 42562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 29261201 - 29261163
Alignment:
Q  94 aggtatttgtttgtgaactccggtagatggattccatag 132  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  29261201 aggtatttgtttgtggactccggttgatggattccatag 29261163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 29688061 - 29688019
Alignment:
Q  95 ggtatttgtttgtgaactccggtagatggattccataggtaaa 137  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||    
T  29688061 ggtatttgtctgtgaactccggtggatggattccatagataaa 29688019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 47452023 - 47452115
Alignment:
Q  86 ggagacaaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    |||| |||||||||||||||||||||||| || ||||||||||||| ||| || | ||||||||     |||| |||||| ||||||||||||    
T  47452023 ggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaa 47452115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 11015641 - 11015727
Alignment:
Q  92 aaaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    ||||||||||||||||||  ||| || ||||||||||||||||| || | ||||||||     |||| |||||| ||||||||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaa 11015727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 11024574 - 11024639
Alignment:
Q  7 caagtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaa 72  Q
    ||||||||||||  ||||  ||||||||||||||||||||||| ||||  ||||| || |||||||    
T  11024574 caagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatgaatatttggcatctaa 11024639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 24310135 - 24310050
Alignment:
Q  93 aaggtatttgtttgtgaactccggtagatggattccataggtaaatctctgaagaacggtgaaaaaatataaagcctctacatgaa 178  Q
    ||||||||||| | ||||||||||| ||||||||||||| |||||| | |||| |||  |  || |||||||| ||||||||||||    
T  24310135 aaggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaa 24310050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 30120435 - 30120473
Alignment:
Q  94 aggtatttgtttgtgaactccggtagatggattccatag 132  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  30120435 aggtatttgtttgtggactccggtggatggattccatag 30120473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 48883833 - 48883712
Alignment:
Q  10 gtaatcatcggttgacgggtcatacccaaaaccatatagataacagaaata-tgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtg 108  Q
    |||||||||  ||||||||||||| |||||||||||||||| |  |||||| ||| |  ||| |  | |||| ||  |||||||||||||||||||||||    
T  48883833 gtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgtact-tctgaaatggaataaaaaggagacaaaggtatttgtttgtg 48883735  T
Q  109 aactccggtagatggattccata 131  Q
    || ||| ||  ||||||||||||    
T  48883734 aaatccagtgtatggattccata 48883712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 4031960 - 4032105
Alignment:
Q  20 gttgacgggtcatacccaaaaccatatagataacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaactccggtag 119  Q
    |||||| ||||||||||||||||||||| ||||| |||| |     | ||||   | |||| ||| ||||| |||||||||||||||||||||||  | |    
T  4031960 gttgactggtcatacccaaaaccatataaataaccgaaacaaccatcgtctagattggaattaataggagataaaggtatttgtttgtgaactccaatgg 4032059  T
Q  120 atggattccataggtaaatctctgaagaacggtgaaaaaatataaa 165  Q
    ||| |||||||||    || |||||||||| ||| | |||||||||    
T  4032060 atgaattccatagaagtatgtctgaagaactgtgcataaatataaa 4032105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University