View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19145_low_8 (Length: 509)

Name: NF19145_low_8
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19145_low_8
NF19145_low_8
[»] chr4 (2 HSPs)
chr4 (11-509)||(51079018-51079516)
chr4 (412-481)||(56127358-56127427)
[»] chr1 (2 HSPs)
chr1 (305-481)||(41625467-41625643)
chr1 (365-459)||(7890382-7890476)
[»] chr5 (3 HSPs)
chr5 (409-468)||(8939822-8939881)
chr5 (396-481)||(33155621-33155706)
chr5 (406-481)||(33234660-33234735)
[»] chr6 (3 HSPs)
chr6 (366-451)||(13587603-13587688)
chr6 (364-455)||(27598161-27598252)
chr6 (435-481)||(11620273-11620319)
[»] chr8 (7 HSPs)
chr8 (383-465)||(33474216-33474298)
chr8 (417-470)||(13921204-13921257)
chr8 (365-479)||(3795332-3795445)
chr8 (298-471)||(6863031-6863205)
chr8 (396-481)||(34018257-34018342)
chr8 (312-361)||(13921157-13921206)
chr8 (396-468)||(39785588-39785660)
[»] chr2 (2 HSPs)
chr2 (303-475)||(42206071-42206243)
chr2 (409-480)||(4522359-4522430)
[»] chr3 (4 HSPs)
chr3 (303-479)||(19137077-19137252)
chr3 (365-450)||(40285411-40285496)
chr3 (409-458)||(52416376-52416425)
chr3 (410-453)||(33424966-33425010)
[»] chr7 (1 HSPs)
chr7 (366-448)||(47872955-47873037)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 51079516 - 51079018
Alignment:
Q  11 cagagacttgatgcaaagaatgcacttattggtatcacacaagttgcatatctgtgacagagagaacacgttcagaaataagttagtcaaaggattacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  51079516 cagagacttgatgcaaagaatgcacttattggtatcacacaagttgcatatctgtgacagaaagaacacgtttagaaataagttagtcaaaggattacaa 51079417  T
Q  111 agcacaggaaggcataaaatcattggcacgcagactcacatttcaaatgtcattttgacaggagatacaacctgcaaatcagacaataaaaatttgatca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51079416 agcacaggaaggcataaaatcattggcacgcagactcacatttcaaatgtcatttttacaggagatacaacctgcaaatcagacaataaaaatttgatca 51079317  T
Q  211 agcaaggatggtaggcaataaaagttcaagtaacaatatcctaatgaaagtgaaacacagacatgtatgtatgtacacaaataaatataggatttgtctt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51079316 agcaaggatggtaggcaataaaagttcaagtaacaatatcctaatgaaagtgaaacacagacatgtatgtatgtacacaaataaatataggatttgtctt 51079217  T
Q  311 acatgcacaaacaaattactcttgcaccatgcaaaagtctgttttctaccacaggatcaataaatctcatcctattttattaaacttaatagtggaattt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51079216 acatgcacaaacaaattactcttgcaccatgcaaaagtctgttttctaccacaggatcaataaatctcatcctattttattaaacttaatagtggaattt 51079117  T
Q  411 attgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggcgataaatataaggtagagtgtttccctt 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51079116 attgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggcgataaatataaggtagagtgtttccctt 51079018  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 481
Target Start/End: Complemental strand, 56127427 - 56127358
Alignment:
Q  412 ttgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggc 481  Q
    |||| ||||| ||| ||||||  |||||||||||||||||||| |||  ||||||||||||||| |||||    
T  56127427 ttgaaccaatggtgaaaacaagtttgtgcatggtgcaagacttgtctcacttgtgcaccatagacttggc 56127358  T

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Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 305 - 481
Target Start/End: Complemental strand, 41625643 - 41625467
Alignment:
Q  305 tgtcttacatgcacaaacaaattactcttgcaccatgcaaaagtctgttttctaccacaggatcaataaatctcatcctattttattaaacttaatagtg 404  Q
    ||||| ||||||| || ||||||||| |||||||||  | |||||| ||||||||||  |||||||| ||||||||| ||||||||| || |||||||||    
T  41625643 tgtctaacatgcataagcaaattacttttgcaccatatacaagtctattttctaccattggatcaatgaatctcatcatattttatttaatttaatagtg 41625544  T
Q  405 gaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggc 481  Q
     |||||||||||| ||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  41625543 aaatttattgatctaatggtggaaagaatcttgtgcatggtgcaagacttatcttgcatgtgcaccatagacttggc 41625467  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 459
Target Start/End: Complemental strand, 7890476 - 7890382
Alignment:
Q  365 gatcaataaatctcatcctattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatctt 459  Q
    ||||||||  || |||| ||||| ||| || ||||| ||| |||||||||||||||||||| |||| || ||||||||| ||||| |||| ||||    
T  7890476 gatcaatacgtcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaactactttgtgcatgatgcaatacttgtctt 7890382  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 8939881 - 8939822
Alignment:
Q  409 ttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgca 468  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  8939881 ttattgatccaatggtggaaacaactttgtgcatggtgcaagacttaacttccttgtgca 8939822  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 33155621 - 33155706
Alignment:
Q  396 ttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggc 481  Q
    ||||| |||| ||||||||||||||| ||| |||| | |||||||||| |||||||||| |||  |||||||||| |||| |||||    
T  33155621 ttaatggtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaagacttgtctcacttgtgcaccttagaattggc 33155706  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 33234735 - 33234660
Alignment:
Q  406 aatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggc 481  Q
    ||||||||||||| || || ||||||| ||||||||| ||||||||| |||||  ||||||||| ||||| |||||    
T  33234735 aatttattgatccgatggttgaaacaagcttgtgcattgtgcaagacctatctcacttgtgcactatagaattggc 33234660  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 13587688 - 13587603
Alignment:
Q  366 atcaataaatctcatcctattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaaga 451  Q
    |||| |||||||| || ||||| ||| || |||||||||  ||||||||||||||| || ||||||||||| ||||||||||||||    
T  13587688 atcattaaatctcgtcatatttcattcaatttaatagtgagatttattgatccaatggtagaaacaaccttatgcatggtgcaaga 13587603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 455
Target Start/End: Complemental strand, 27598252 - 27598161
Alignment:
Q  364 ggatcaataaatctcatcctattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagactta 455  Q
    |||||||||||||||| | ||||| ||| || |||||| ||    ||||||||||||| ||  |||| || |||||||||||||||||||||    
T  27598252 ggatcaataaatctcaccatatttcatttaatttaatactgagccttattgatccaatggtaaaaaccacgttgtgcatggtgcaagactta 27598161  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 11620273 - 11620319
Alignment:
Q  435 ttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggc 481  Q
    |||||||||| |||||||||||||| |||||| |||||||| |||||    
T  11620273 ttgtgcatggcgcaagacttatcttccttgtgaaccatagacttggc 11620319  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 383 - 465
Target Start/End: Complemental strand, 33474298 - 33474216
Alignment:
Q  383 tattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgt 465  Q
    ||||||||| || ||||| ||| || ||||||||| ||| ||| |||||||||||| |||| ||||||||||||||| |||||    
T  33474298 tattttatttaatttaatggtgaaacttattgatcaaatggtgaaaacaaccttgtacatgatgcaagacttatcttccttgt 33474216  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 13921204 - 13921257
Alignment:
Q  417 ccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcacc 470  Q
    ||||| |||||||||||||||| |||||||||||||||||| | ||||||||||    
T  13921204 ccaatggtggaaacaaccttgtacatggtgcaagacttatcatccttgtgcacc 13921257  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 479
Target Start/End: Complemental strand, 3795445 - 3795332
Alignment:
Q  365 gatcaataaatctcatcctattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttg 464  Q
    |||||||||||| ||   ||||| ||| |||||| | ||| || ||||| |||||||  |||||||||| ||||||||| |||| ||||| || | ||||    
T  3795445 gatcaataaatcacaatatatttaatttaacttacttgtgaaacttatt-atccaatgttggaaacaacattgtgcatgttgcatgacttctcatccttg 3795347  T
Q  465 tgcaccatagagttg 479  Q
    |||||||||||||||    
T  3795346 tgcaccatagagttg 3795332  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 471
Target Start/End: Complemental strand, 6863205 - 6863031
Alignment:
Q  298 taggatttgtcttacatgcacaaacaaattactcttgcaccatgcaaaagtctgttttctaccacaggatcaataaa-tctcatcctattttattaaact 396  Q
    |||| ||||||| |||||||||| |||| |  |||||||||||||| ||||   ||||| ||||   ||| || ||| || |||| ||||| ||| || |    
T  6863205 taggctttgtctaacatgcacaagcaaaatggtcttgcaccatgcacaagtgccttttccaccattagataaaaaaagtcacatcatatttcatttaatt 6863106  T
Q  397 taatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcacca 471  Q
    |||| |||  ||||||||||||||| |||||||| | |||||| ||| |||||||||| |||  ||| |||||||    
T  6863105 taatggtgagatttattgatccaatggtggaaactagcttgtgtatgatgcaagacttgtctcacttatgcacca 6863031  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 34018257 - 34018342
Alignment:
Q  396 ttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttggc 481  Q
    ||||| |||||||||||||||||||| ||  |||| | |||||||||| |||||||||| |||  ||| |||||| |||| |||||    
T  34018257 ttaatggtggaatttattgatccaatggtaaaaactagcttgtgcatgatgcaagacttgtctcacttatgcaccttagaattggc 34018342  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 13921157 - 13921206
Alignment:
Q  312 catgcacaaacaaattactcttgcaccatgcaaaagtctgttttctacca 361  Q
    |||||||||  ||||| ||||||||||||||| |||||| ||||||||||    
T  13921157 catgcacaagtaaattgctcttgcaccatgcacaagtctcttttctacca 13921206  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 468
Target Start/End: Complemental strand, 39785660 - 39785588
Alignment:
Q  396 ttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgca 468  Q
    ||||| |||| ||||||||||||||| ||| |||| | ||| |||||| |||||||||| |||  ||||||||    
T  39785660 ttaattgtgggatttattgatccaatggtgaaaactagcttatgcatgatgcaagacttgtctcacttgtgca 39785588  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 475
Target Start/End: Complemental strand, 42206243 - 42206071
Alignment:
Q  303 tttgtcttacatgcacaaacaaattactcttgcaccatgcaaaagtctgttttctaccacaggatcaataaatctcatcctattttattaaacttaatag 402  Q
    ||||||| | |||||||||||||||| | ||| |||||||| || | ||||||  | ||   ||||| |||||||| || ||||| ||| || ||||  |    
T  42206243 tttgtctaatatgcacaaacaaattagtattgtaccatgcacaaatttgtttttcagcattagatcattaaatctcttcgtatttcatttaatttaacgg 42206144  T
Q  403 tggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccataga 475  Q
    ||  | ||||||||| | | || |||| |||||||||||||||||||||| ||| |   ||||||||||||||    
T  42206143 tgcgacttattgatctattggtagaaaaaaccttgtgcatggtgcaagacatatgtcttttgtgcaccataga 42206071  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 4522359 - 4522430
Alignment:
Q  409 ttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttgg 480  Q
    ||||||||||| |  ||||||| |  ||||||||| ||||||||||||||| ||| ||||||||||| ||||    
T  4522359 ttattgatccagtgatggaaactaatttgtgcatgatgcaagacttatcttacttttgcaccatagaattgg 4522430  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 479
Target Start/End: Original strand, 19137077 - 19137252
Alignment:
Q  303 tttgtcttacatgcacaaacaaattactcttgcaccatgcaaaagtctgttttctaccacaggatcaataaatctcatcctattttatta--aacttaat 400  Q
    ||||||| |||||||||| ||||| | |||||||  ||||| || ||| |||||||||   |||| | ||||||||||| |||||||||   || |||||    
T  19137077 tttgtctaacatgcacaagcaaatcattcttgcattatgcacaa-tctattttctacccttggatga-taaatctcatcatattttattttcaatttaat 19137174  T
Q  401 agtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatcttgcttgtgcaccatagagttg 479  Q
    |||| |||||| | ||  ||| | ||||||||  ||||| ||||||||||| |||| ||| || |||||||||||||||    
T  19137175 agtgaaatttaataataaaatgg-ggaaacaagtttgtgtatggtgcaagagttattttgtttatgcaccatagagttg 19137252  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 40285411 - 40285496
Alignment:
Q  365 gatcaataaatctcatcctattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgcaag 450  Q
    ||||| |||||||| |  ||||||||| || |||||||||  | ||||||||| ||| ||  ||||||| ||||||||||||||||    
T  40285411 gatcattaaatctcgttatattttattcaatttaatagtgagacttattgatcaaattgtataaacaactttgtgcatggtgcaag 40285496  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 52416425 - 52416376
Alignment:
Q  409 ttattgatccaatagtggaaacaaccttgtgcatggtgcaagacttatct 458  Q
    ||||||||||||| ||||||||||   ||||||||||||||||| |||||    
T  52416425 ttattgatccaatggtggaaacaagtatgtgcatggtgcaagacgtatct 52416376  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 453
Target Start/End: Original strand, 33424966 - 33425010
Alignment:
Q  410 tattgatccaatagtgg-aaacaaccttgtgcatggtgcaagact 453  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||    
T  33424966 tattgatccaatagtggtaaacaaacttgtgcatgatgcaagact 33425010  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 448
Target Start/End: Complemental strand, 47873037 - 47872955
Alignment:
Q  366 atcaataaatctcatcctattttattaaacttaatagtggaatttattgatccaatagtggaaacaaccttgtgcatggtgca 448  Q
    |||| ||||||||||| ||||| ||| || ||||||||  ||||||||||  ||||||| |||| |||||||| || ||||||    
T  47873037 atcattaaatctcatcatatttcatttaatttaatagtaaaatttattgactcaatagtagaaataaccttgtacagggtgca 47872955  T

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