View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19145_low_9 (Length: 471)
Name: NF19145_low_9
Description: NF19145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19145_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 48770939 - 48770731
Alignment:
| Q |
10 |
aagaatatacacattaattaatcaataaagagtcaattcagttttttgcatcaaattttgcattaattatttatttatttcttcctaacccaatatataa |
109 |
Q |
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| T |
48770939 |
aagaatatacacattaattaatcaataaagagtcaattcagttttttgcatcaaattttgcattaattatttatttatttcttcctaacccaatatataa |
48770840 |
T |
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| Q |
110 |
tannnnnnnnnnnnngaactagtagaagattatgtttgaatgaatgtctgaattgttgaacaaacaaactatgggttgtcttgaacttgaactaaaatta |
209 |
Q |
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| T |
48770839 |
ta-ttttttatttttgaactagtagaagattatgtttgaatgaatgtctgaattgttgaacaaacaaactatgggttgtcttgaacttgaactaaaatta |
48770741 |
T |
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| Q |
210 |
aacaaaagac |
219 |
Q |
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| T |
48770740 |
aacaaaagac |
48770731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 48770633 - 48770467
Alignment:
| Q |
317 |
aaccattatccatatcaattgtaaaatttatgcacacaaaattaaat------------caaattttgtgtttatatttcaaaaaatgaccctacactaa |
404 |
Q |
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| T |
48770633 |
aaccattatccatatcaattgtaaaatttatgcacacaaaattaaattaaaaattaaatcaaattttgtgtttatatttcaaaaaatgaccctacactaa |
48770534 |
T |
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| Q |
405 |
tgttatgatcacttggaatccttggcaggcaaaaatcaaatagacaatagtgcttttctttcatcat |
471 |
Q |
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| T |
48770533 |
tgttatgatcacttggtatccttggcaggaaaaaatcaaataaacaatagtgcttttctttcatcat |
48770467 |
T |
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