View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19146_high_1 (Length: 501)
Name: NF19146_high_1
Description: NF19146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19146_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Complemental strand, 150090 - 149640
Alignment:
| Q |
15 |
agataggaatcgtagtgagcttcacttgagcaatatttgtgaccagcaggtatactatatatggttgtgtgcttttattgtt-gctaaaagactcaatga |
113 |
Q |
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| T |
150090 |
agataggaatcgtagtgagcttcacttgagcaatatttgtgaccag---gtatactatatatggttgtgtgcttttattgtttgctaaaagactcaatga |
149994 |
T |
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| Q |
114 |
gtgttgactgatattaagtcttcataccactgcctccaaatgcgctatacggagtaaattaattaatctaattactacaattttgaccatgattgatcca |
213 |
Q |
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| T |
149993 |
gtgttgactgatattaagtcttcataccactgcctccaaatgcgctatacggagtaaattaattaatctaattactacaattttgaccatgatcgatcca |
149894 |
T |
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| Q |
214 |
tcatgaaataaaaccaattcacaaatatagctcaataattatttgctttcgtatgtctgatgaggtgggatgagattatatggatacgtcatatggaaag |
313 |
Q |
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| T |
149893 |
tcatgaaataaaaccaattcacaaatatagctcaataattatttgctttcgtatgtgtgatgaggtgggatgagattatatggatacgtcatatggaaag |
149794 |
T |
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| Q |
314 |
atggatgggacatcccttgctcaggagcatttataaggtaatcttaaattgtatatgcaattaattatcatcacctcttccttcactctccctccatatt |
413 |
Q |
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| T |
149793 |
atggatgggacatcccttgctcaggagcatt--------------------tatatgcaatcaattatcatcacctcttccttcact----ctccatatt |
149718 |
T |
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| Q |
414 |
atgttgttcacatgaggtatggaattattgtgaagtggcatgagagcttgatacaaagaaaaattccttataattcat |
491 |
Q |
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| T |
149717 |
atgttgttcacatgaggtatggaattattgtgaagtggcatgagagcttgatacaaagaaaaattccttataattcat |
149640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 351 - 460
Target Start/End: Complemental strand, 154883 - 154777
Alignment:
| Q |
351 |
gtaatcttaaattgtatatgcaatt-aattatcatcacctcttccttcactctccctccatattatgttgttcacatgaggtatggaattattgtgaagt |
449 |
Q |
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| T |
154883 |
gtaatcttcaattgtatatgcaactcaattatcatcacctcttccttcactctcc----atattatgttgttcacatgcggtatggaattattgtgaagt |
154788 |
T |
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| Q |
450 |
ggcatgagagc |
460 |
Q |
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| T |
154787 |
agcatgagagc |
154777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 157914 - 157849
Alignment:
| Q |
82 |
tgtgcttttattgttgctaaaagactcaatgagtgttgactgatattaagtcttcataccactgcc |
147 |
Q |
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| T |
157914 |
tgtgcttttattgttgctgaaagactcaatgagtgttgactgatgttaagtcttcataccactgcc |
157849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 155003 - 154943
Alignment:
| Q |
240 |
atagctcaataattatttgctttcgtatgtctgatgaggtgggatgagattatatggatac |
300 |
Q |
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| T |
155003 |
atagctcaataattatttgcttttgtatatctgatgaggtgggatgagattatatggatac |
154943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 48087972 - 48088045
Alignment:
| Q |
143 |
ctgcctccaaatgcgctatacggagtaaattaattaatctaattactacaattttgaccatgattgatccatcatgaaataaaac |
227 |
Q |
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| T |
48087972 |
ctgcctccaaatgcgatatacggagtaaattaat----ctaattac---aattttgaccatgat----ccatcatgaaataaaac |
48088045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 23691880 - 23691843
Alignment:
| Q |
454 |
tgagagcttgatacaaagaaaaattccttataattcat |
491 |
Q |
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| T |
23691880 |
tgagagcttgatacaaagaaaaaatccttaaaattcat |
23691843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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