View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19146_low_2 (Length: 370)
Name: NF19146_low_2
Description: NF19146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19146_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 129 - 365
Target Start/End: Complemental strand, 2174170 - 2173934
Alignment:
| Q |
129 |
tcaaaatgcatatagtgtgacaaggaatattatctattttacccttgtgattaaatactttaatcttttctatattactattacctaacctagaacttcc |
228 |
Q |
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| T |
2174170 |
tcaaaatgcatatagtgtgacaaggaatattatctattttacccttgtgattaaatactttaatcttttctatattattattacctaacctagaacttcc |
2174071 |
T |
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| Q |
229 |
ttcatcaacattgccaaataagccaacattcaaggaacatgaaattatcatttcctcatgtattgactgtttgtttttctttcacactatttgtttcccg |
328 |
Q |
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| T |
2174070 |
ttcatcaacattgccaaataagccaacattcaaggaacatgaaattatcatttcctcatgtattgactgtttgtttttctttcacactatttgtttcccg |
2173971 |
T |
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| Q |
329 |
ttgaaatccgctaattatatgcacctattcatctctc |
365 |
Q |
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| T |
2173970 |
ttgaaatccgctaattatatgcacctattcatttctc |
2173934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 2174209 - 2174161
Alignment:
| Q |
40 |
ggatgttcatttttctgtagcagcagcatgtgcaacatttcaaaatgca |
88 |
Q |
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| T |
2174209 |
ggatgttcatttttctgtagtagcagcatgtgcaacatttcaaaatgca |
2174161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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