View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_high_1 (Length: 430)
Name: NF19147_high_1
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 39973243 - 39973069
Alignment:
| Q |
18 |
taattgtggtgaaaaataacaatttaattatgctttaacaattgacgttgcaaacaatatttcacaagttaacaatgcagagtgatttgtttcatacgtt |
117 |
Q |
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| T |
39973243 |
taattgtggtgaaaaataacaatttaattatgctttaacaattgacgttgcaaacaatattttacaagttaacaatgcagagtgatttgtttcctacgtt |
39973144 |
T |
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| Q |
118 |
aatattgagaatatcttacatgatcacaagcatgtggatgtggacacacaatttgagtgcacatgtaagaaaatg |
192 |
Q |
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| T |
39973143 |
aatattgagaatatcttacatgatcacaagcatgtggatgtggacacacaatttgagtgcacatgcaagaaaatg |
39973069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 39972981 - 39972923
Alignment:
| Q |
293 |
taaatacttgtggtcaagtaaatattttctactaatattataattttttgttctaaaga |
351 |
Q |
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| T |
39972981 |
taaatacttgtggtcaagtaaatattttctactaatattataattttttgttctaaaga |
39972923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 39972923 - 39972877
Alignment:
| Q |
370 |
acacactaaacatatgctttaggttaaagggggttttcttgcgtccc |
416 |
Q |
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| T |
39972923 |
acacactaaacatatgctttaggttaaaggaggttttcttgcgtccc |
39972877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 286
Target Start/End: Complemental strand, 39973006 - 39972975
Alignment:
| Q |
255 |
aagagtatgagtaactgactgtgtttaaatac |
286 |
Q |
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| T |
39973006 |
aagagtatgagtaactgactgtgtttaaatac |
39972975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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