View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19147_high_11 (Length: 245)

Name: NF19147_high_11
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19147_high_11
NF19147_high_11
[»] chr4 (5 HSPs)
chr4 (1-228)||(36246439-36246666)
chr4 (100-143)||(52071519-52071562)
chr4 (101-146)||(27808566-27808611)
chr4 (107-176)||(31941926-31941995)
chr4 (107-176)||(32000885-32000954)
[»] chr2 (2 HSPs)
chr2 (75-193)||(2892226-2892344)
chr2 (75-201)||(37881267-37881393)
[»] chr3 (1 HSPs)
chr3 (101-149)||(44674752-44674800)
[»] chr8 (3 HSPs)
chr8 (106-149)||(39916909-39916952)
chr8 (99-182)||(11747427-11747510)
chr8 (100-140)||(7195699-7195739)
[»] chr1 (3 HSPs)
chr1 (96-139)||(27632581-27632624)
chr1 (100-143)||(45594286-45594329)
chr1 (101-139)||(17118247-17118285)
[»] chr5 (1 HSPs)
chr5 (106-143)||(19221386-19221423)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36246439 - 36246666
Alignment:
Q  1 tatgattaagatactatatacgacagaataatagatatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36246439 tatgattaagacactatatacgacagaataatagatatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggc 36246538  T
Q  101 taccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcctgtaacacataatccacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36246539 taccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcctgtgacacataatccacg 36246638  T
Q  201 ttttgatcttttggacctatcttctatc 228  Q
    ||||||||||||||||||||||||||||    
T  36246639 ttttgatcttttggacctatcttctatc 36246666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 52071562 - 52071519
Alignment:
Q  100 ctaccaggaagaacagacaatgaaatcaagaattattggaacac 143  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  52071562 ctaccagggcgaacagacaatgaaatcaagaattattggaacac 52071519  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 27808566 - 27808611
Alignment:
Q  101 taccaggaagaacagacaatgaaatcaagaattattggaacactca 146  Q
    |||||||||||||||| ||||| || ||||||||||||||||||||    
T  27808566 taccaggaagaacagataatgagataaagaattattggaacactca 27808611  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 31941926 - 31941995
Alignment:
Q  107 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 176  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  31941926 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 31941995  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 32000885 - 32000954
Alignment:
Q  107 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 176  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  32000885 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 32000954  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 2892344 - 2892226
Alignment:
Q  75 taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatggga 174  Q
    |||||||||| ||||||| ||| |  |||||||||| || ||||||||||| || || ||||||||||| |||||||||||||| || || |||||||||    
T  2892344 taggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatggga 2892245  T
Q  175 attgatcctgtaacacata 193  Q
    |||||||| ||||||||||    
T  2892244 attgatccagtaacacata 2892226  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 37881393 - 37881267
Alignment:
Q  75 taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatggga 174  Q
    |||||||||| | || ||| ||||  |||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||  |  |||  |||    
T  37881393 taggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagactacttcgaagtgga 37881294  T
Q  175 attgatcctgtaacacataatccacgt 201  Q
    ||||||||||| || |||| |||||||    
T  37881293 attgatcctgttactcatactccacgt 37881267  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 44674752 - 44674800
Alignment:
Q  101 taccaggaagaacagacaatgaaatcaagaattattggaacactcacat 149  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  44674752 taccaggaagaacagataatgagatcaagaattactggaacactcacat 44674800  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 39916909 - 39916952
Alignment:
Q  106 ggaagaacagacaatgaaatcaagaattattggaacactcacat 149  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  39916909 ggaagaacagacaatgagatcaagaactattggaacactcacat 39916952  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 11747427 - 11747510
Alignment:
Q  99 gctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcc 182  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||| ||| | | |||| | ||| || | ||||||||||||||    
T  11747427 gctaccaggaagaactgacaatgagatcaagaatttatggaacacacacttaaagaaacgtctcatatgcatgggaattgatcc 11747510  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 7195699 - 7195739
Alignment:
Q  100 ctaccaggaagaacagacaatgaaatcaagaattattggaa 140  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  7195699 ctaccaggacgaacagacaatgaaatcaagaactactggaa 7195739  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 27632624 - 27632581
Alignment:
Q  96 taggctaccaggaagaacagacaatgaaatcaagaattattgga 139  Q
    |||||| ||||||||||||||||||||||||||||| |||||||    
T  27632624 taggcttccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 45594329 - 45594286
Alignment:
Q  100 ctaccaggaagaacagacaatgaaatcaagaattattggaacac 143  Q
    ||||||||||||||||||||||| || ||||| |||||||||||    
T  45594329 ctaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 17118285 - 17118247
Alignment:
Q  101 taccaggaagaacagacaatgaaatcaagaattattgga 139  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  17118285 taccaggaagaacagacaatgaaataaagaattactgga 17118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 19221386 - 19221423
Alignment:
Q  106 ggaagaacagacaatgaaatcaagaattattggaacac 143  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  19221386 ggaagaacagacaatgaaataaagaatcattggaacac 19221423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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