View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_high_15 (Length: 236)
Name: NF19147_high_15
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20684122 - 20684341
Alignment:
| Q |
1 |
tttaatttgatttattgaatgagaggaggaattccaaaaataggtttgggcaggtggtggcattggaccactctcaaagtcctatatacatataagaaga |
100 |
Q |
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| T |
20684122 |
tttaatttgatctattgaatgagaggaggaattccaaaaataggtttgggcaggtggtggcattggaccactctcaaagtcctatatacatataagaaga |
20684221 |
T |
|
| Q |
101 |
cagttacaggcagaggaaccacnnnnnnnngctcatagcattagcaaaacaaccaataaaaggaaaaaagagataacacacaatgacacatatctctcac |
200 |
Q |
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|||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20684222 |
cagttacaggcagaggaatcac-aaaaaaagcttatagcattagcaaaacaaccaataaaaggaaaaaagagataacacacaatgacacatatctctcac |
20684320 |
T |
|
| Q |
201 |
ctcaccattaggtacatatac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
20684321 |
ctcaccattaggtacatatac |
20684341 |
T |
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