View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_high_16 (Length: 226)
Name: NF19147_high_16
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_high_16 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2923973 - 2924198
Alignment:
| Q |
1 |
catgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923973 |
catgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcatga |
2924072 |
T |
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| Q |
101 |
agtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
2924073 |
agtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcgcttacatcaggcaaattcgctc |
2924172 |
T |
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| Q |
201 |
tctcgaagcagtcaataaccgttctt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2924173 |
tctcgaagcagtcaataaccgttctt |
2924198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36126911 - 36126686
Alignment:
| Q |
1 |
catgctcaaaatatgatctccagcttccagaagtgtaatttttactaaatctttgaccccaggatataaatggactaaatcctcgttgacgaagtcatga |
100 |
Q |
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||||||||| |||||| ||||||| |||| || || ||||| ||||||||||| |||||||| ||||| | ||| |||||||| |||| || |||||| |
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| T |
36126911 |
catgctcaagatatgacctccagcctccaagagcgtgattttaactaaatcttttaccccagggtataatttgaccaaatcctcactgacaaaatcatga |
36126812 |
T |
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| Q |
101 |
agtgaagctgcgaactccactccagttggccctcctccaacaatagcaaaatgaagaattctcttcttttcttcctcacttacagcaggcaaattcgctc |
200 |
Q |
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|||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| | ||||| ||||| ||| ||||||| | |||| |
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| T |
36126811 |
agtgcggctgcaaactctactccagttggaccacctccaacaatagcaaaatgaagaattctctttctctcttcatcactcacactaggcaaacttgctc |
36126712 |
T |
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| Q |
201 |
tctcgaagcagtcaataaccgttctt |
226 |
Q |
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|||| |||| |||||| || |||||| |
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| T |
36126711 |
tctcaaagctgtcaattacagttctt |
36126686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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