View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_high_4 (Length: 374)
Name: NF19147_high_4
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 11159887 - 11160222
Alignment:
| Q |
22 |
tctggtcccaaattccagaagacattgtgcatgtactgttctttcttccaaacaaaatgcttcttcttcttttttacgtacacatttgctatcatacttc |
121 |
Q |
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| T |
11159887 |
tctggtcccaaattccagaagacattgtgcatgtactgttctttcttccaaacaaaatgcttcttcttcttttttacgtacacatttgctatcacacttc |
11159986 |
T |
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| Q |
122 |
agctacacaaatgttacttccagttccaatatatttagacttaataccaaataaatgaaatattacatttttactaatatgaatttgagaaagtaatgta |
221 |
Q |
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| T |
11159987 |
agctacacaaatgttacttccagttccaatatatttagacttaatacgaaataaatgaaatattacatttttactaatatgaatttgagaaagtaatgta |
11160086 |
T |
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| Q |
222 |
atattttgttgggatcatgagaaagtttggatcatcacattttattttatttgaacaaccatacaaatggtactttgataccacattttaactcataact |
321 |
Q |
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| T |
11160087 |
atattttgttggg-tcatgagaaagtttggatcatcacattttat----tttgaacaaccatacaaatggtactttgataccacattttaactcataact |
11160181 |
T |
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| Q |
322 |
ttgaagctttaaatatatgagttaactcatttatagatatt |
362 |
Q |
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| T |
11160182 |
ttaaagctttaaatatatgagttaactcatttatagatatt |
11160222 |
T |
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