View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_high_6 (Length: 321)
Name: NF19147_high_6
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 5440720 - 5441036
Alignment:
| Q |
1 |
aattttaaaatttctatagttgctcatatagtcttatgttgtcaatatgtatgaagatcataaaacaatttaagcatgccaacattatgcatgagcatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5440720 |
aattttaaaatttctatagttgctcatatagtcttatgttgtcaatatgtatgaagatcataaaacaatttcagcatgccaacattatgcatgagcatac |
5440819 |
T |
|
| Q |
101 |
aaaagatggtgatacatagttgaatgacatgatttaatttttgtcggtatctatgatagataaataaattgtaccagtttttgttcttggtaaccagtca |
200 |
Q |
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| T |
5440820 |
aaaagatggtgatacatagttgaatgacatgatttaatttttgtcggtatctacgatagataaataaattgtaccagtttttgttcttggtaaccagtca |
5440919 |
T |
|
| Q |
201 |
tctgcgaatatgttttttgaaaagcttttagttcttcacctcgctgcaccgactnnnnnnntgcactaatgttagttgaatataaataggattaatttat |
300 |
Q |
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| T |
5440920 |
tctgcgaatatgttttttgaaaagcttttagttcttcacctcgctgcaccgactaaaaaaatgcactaatgttagttgaatataaataggattaatttat |
5441019 |
T |
|
| Q |
301 |
actatttaaaatatttt |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
5441020 |
actatttaaaatatttt |
5441036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 164 - 317
Target Start/End: Complemental strand, 3856976 - 3856823
Alignment:
| Q |
164 |
ataaattgtaccagtttttgttcttggtaaccagtcatctgcgaatatgttttttgaaaagcttttagttcttcacctcgctgcaccgactnnnnnnntg |
263 |
Q |
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|||||||||||||||||||||||| ||| |||| || |||| || | |||||| ||||||||||| ||||||||| || | |||||||||| || |
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| T |
3856976 |
ataaattgtaccagtttttgttctaggtgaccattcttctgggagtgtgttttctgaaaagctttcagttcttcatcttgttgcaccgactgaaagaatg |
3856877 |
T |
|
| Q |
264 |
cactaatgttagttgaatataaataggattaatttatactatttaaaatatttt |
317 |
Q |
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| T |
3856876 |
aattaatgttagttgaatataaataagataacttcatgctatttaaaatatttt |
3856823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 164 - 317
Target Start/End: Complemental strand, 3865733 - 3865580
Alignment:
| Q |
164 |
ataaattgtaccagtttttgttcttggtaaccagtcatctgcgaatatgttttttgaaaagcttttagttcttcacctcgctgcaccgactnnnnnnntg |
263 |
Q |
| |
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|||||||||||||||||||||||| ||| |||| || |||| || | |||||| ||||||||||| ||||||||| || | |||||||||| || |
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| T |
3865733 |
ataaattgtaccagtttttgttctaggtgaccattcttctgggagtgtgttttctgaaaagctttcagttcttcatcttgttgcaccgactgaaagaatg |
3865634 |
T |
|
| Q |
264 |
cactaatgttagttgaatataaataggattaatttatactatttaaaatatttt |
317 |
Q |
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| T |
3865633 |
aattaatgttagttgaatataaataagataacttcatgctatttaaaatatttt |
3865580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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