View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_low_10 (Length: 258)
Name: NF19147_low_10
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 41208194 - 41207965
Alignment:
| Q |
17 |
tagagaatgatggaccgttacatatatgtttgatgttataacaataagaacaatggtagcatgcaaataaggagacaactatagtgnnnnnnnnn----g |
112 |
Q |
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| T |
41208194 |
tagagaatgatggaccgttacatatatgtttgatgttataacaataagaacaatggtagcatgcaaataaggagacaactatagtgagagaaaaaaaaag |
41208095 |
T |
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| Q |
113 |
gaagaaaaacaaggttaaggttataaggtaagtgatgaaaaaatcaagcagcatcaacaataacaacattaagatatgttagattggtttagcacaatgt |
212 |
Q |
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| T |
41208094 |
gaagaaaaacaaggttaaggttataaagtaagtgatgaaaaaatcaagcagcatcaacaataacaacattaagatatgttagattggtttaacacaatgt |
41207995 |
T |
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| Q |
213 |
gttaacaagtgaagtgatgagggacatatt |
242 |
Q |
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| T |
41207994 |
gttaacaagtgaagtgatgagggacatatt |
41207965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 41198218 - 41197972
Alignment:
| Q |
8 |
cacagaccttagagaatgatggaccgtta-catatatgtttgatgttataacaataagaacaatggtagcatgcaaataaggagacaactat-------a |
99 |
Q |
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|||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||| || |||| ||| | | |
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| T |
41198218 |
cacaaaccttagagaatgatggacagttaacatatatttttgatgttataacaataagaataatggtagcatgcaagaaatgagagaaccttgttgaaaa |
41198119 |
T |
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| Q |
100 |
gtgnnnnnnnnnggaagaaaaacaaggttaaggttataaggtaagtgatgaaaaaatcaagcagcatcaacaataacaacattaagatatgtta-----g |
194 |
Q |
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| T |
41198118 |
atgaaaataaaaggaagaaaaacaaggttaaggttataaggtaagtgatgaaaaattaaagaaacaagaacaataacaacaataagacatgttatgttgg |
41198019 |
T |
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| Q |
195 |
attggtttagcacaatgtgttaacaagtgaagtgatgagggacatat |
241 |
Q |
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| T |
41198018 |
gttggtttaagacaatgtattaagaactcaagtgatgagggacatat |
41197972 |
T |
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