View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_low_11 (Length: 251)
Name: NF19147_low_11
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 245
Target Start/End: Original strand, 32961876 - 32962097
Alignment:
| Q |
24 |
tggaagttcctcagcaccttcaaagcatacatagagggccccacttttacggttaaatattccacaacgcttgagcacggttctcaatggtacaccacgc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961876 |
tggaagttcctcagcaccttcaaagcatacatagagggccccacttttacggttaaatattccacaacgcttgagcacggttctcaatggtacaccacgc |
32961975 |
T |
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| Q |
124 |
catactgaagtggaggtagcagacggaccccagttaaatccaatagtctgcttcaccatattctgctccttgcgacgattcgcggagcaaacaagcgtga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961976 |
catactgaagtggaggtagcagacggaccccagttaaatccaatagtctgcttcaccatattctgctccttgcgacgattcgcggagcaaacaagcgtga |
32962075 |
T |
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| Q |
224 |
caggaaattcacggcttgggaa |
245 |
Q |
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|||||||||||||||||||||| |
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| T |
32962076 |
caggaaattcacggcttgggaa |
32962097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 32989539 - 32989682
Alignment:
| Q |
24 |
tggaagttcctcagcaccttcaaagcatacatagagggccccacttttacggttaaatattccacaacgcttgagcacggttctcaatggtacaccacgc |
123 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || ||||||| |||||| ||||| | || ||||||||||||| |
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| T |
32989539 |
tggaagttcctcagcaccttcaaaacatacatagagggccccactgttacggttcaagatgccacaactcttgagtacggtgcacagtggtacaccacgc |
32989638 |
T |
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| Q |
124 |
catactgaagtggaggtagcagacggaccccagttaaatccaat |
167 |
Q |
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||||||||||||||| || ||| | ||||||||| || ||||| |
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| T |
32989639 |
catactgaagtggagataccagctgcaccccagttgaaaccaat |
32989682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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