View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19147_low_12 (Length: 250)

Name: NF19147_low_12
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19147_low_12
NF19147_low_12
[»] chr4 (6 HSPs)
chr4 (99-249)||(20681402-20681551)
chr4 (8-63)||(20680211-20680266)
chr4 (103-143)||(7061808-7061848)
chr4 (101-143)||(21698653-21698695)
chr4 (101-144)||(21752536-21752582)
chr4 (103-139)||(49579324-49579360)
[»] chr3 (4 HSPs)
chr3 (101-143)||(37741530-37741572)
chr3 (104-143)||(23068137-23068176)
chr3 (106-142)||(25108663-25108699)
chr3 (101-129)||(49830073-49830101)
[»] chr1 (4 HSPs)
chr1 (103-143)||(41121964-41122004)
chr1 (101-143)||(3312054-3312096)
chr1 (101-139)||(26258086-26258124)
chr1 (101-143)||(45331274-45331316)
[»] chr5 (1 HSPs)
chr5 (101-144)||(4746220-4746263)
[»] chr6 (3 HSPs)
chr6 (101-143)||(34299929-34299971)
chr6 (103-143)||(12307731-12307771)
chr6 (103-143)||(21425696-21425736)
[»] scaffold0011 (1 HSPs)
scaffold0011 (153-186)||(14245-14278)
[»] chr8 (1 HSPs)
chr8 (103-143)||(34948824-34948864)
[»] chr2 (1 HSPs)
chr2 (103-143)||(15359225-15359265)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 249
Target Start/End: Original strand, 20681402 - 20681551
Alignment:
Q  99 tattaaaataattgttactttaaaatatcaatacaatatttattaannnnnnnnattgaatttcgtcaaatttaactactccattaacatctctctaatc 198  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        ||| |||||| |||||||||||||||||||||||| |||| |||||    
T  20681402 tattaaaataattgtcactttaaaatatcaatacaatatttattaattttttt-attaaatttcatcaaatttaactactccattaacacctctgtaatc 20681500  T
Q  199 agtatgacccaaaagcaacaacgacaacaatagaatatctactacacaaat 249  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20681501 tgtatgacccaaaagcaacaacgacaacaatagaatatctactacacaaat 20681551  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 20680211 - 20680266
Alignment:
Q  8 cgaagaatataaggcattcagataatagcacaacacaatggaaaacacggtgatac 63  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20680211 cgaacaatataagacattcagataatagcacaacacaatggaaaacacggtgatac 20680266  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 7061848 - 7061808
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  7061848 aaaataattgttactttaaaatatcaatacaacatttatta 7061808  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 21698695 - 21698653
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  21698695 ttaaaataattgtcactttaaaatatcaatgcaatatttatta 21698653  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 21752582 - 21752536
Alignment:
Q  101 ttaaaataattgttact---ttaaaatatcaatacaatatttattaa 144  Q
    |||||||||||||||||   |||||||||||||| ||||||||||||    
T  21752582 ttaaaataattgttactactttaaaatatcaatataatatttattaa 21752536  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 49579360 - 49579324
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatattt 139  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  49579360 aaaataattgtcactttaaaatatcaatgcaatattt 49579324  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 37741530 - 37741572
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  37741530 ttaaaataattgtcactttaaaatatcaatacaacatttatta 37741572  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 23068137 - 23068176
Alignment:
Q  104 aaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  23068137 aaataattgttactttacaatatcaatacaacatttatta 23068176  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 25108699 - 25108663
Alignment:
Q  106 ataattgttactttaaaatatcaatacaatatttatt 142  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  25108699 ataaatgttactttaaaatatcaatataatatttatt 25108663  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 49830073 - 49830101
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaa 129  Q
    |||||||||||||||||||||||||||||    
T  49830073 ttaaaataattgttactttaaaatatcaa 49830101  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 41122004 - 41121964
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  41122004 aaaataattgtcactttaaaatatcaatacaacatttatta 41121964  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 3312054 - 3312096
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||    
T  3312054 ttaaaataattgtcactttataatatcaatacaacatttatta 3312096  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 26258124 - 26258086
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatattt 139  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  26258124 ttaaaataattgtcactttagaatatcaatacaatattt 26258086  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 45331274 - 45331316
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||    
T  45331274 ttaaaataattgttactttaaaataccaatgcaacatttatta 45331316  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 4746263 - 4746220
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatatttattaa 144  Q
    |||||||||| |||| |||||||||||||| |||||||||||||    
T  4746263 ttaaaataatcgttagtttaaaatatcaatgcaatatttattaa 4746220  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 34299929 - 34299971
Alignment:
Q  101 ttaaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||    
T  34299929 ttaaaataattgtcactttagaatatcaatacaacatttatta 34299971  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 12307771 - 12307731
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    ||||||||||| |||||||||||| ||||||| ||||||||    
T  12307771 aaaataattgtcactttaaaatattaatacaacatttatta 12307731  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 21425736 - 21425696
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    |||||||||||||||||| ||||||||| ||| ||||||||    
T  21425736 aaaataattgttactttacaatatcaatgcaacatttatta 21425696  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 14278 - 14245
Alignment:
Q  153 attgaatttcgtcaaatttaactactccattaac 186  Q
    |||||||||| |||||||||||||||||||||||    
T  14278 attgaatttcatcaaatttaactactccattaac 14245  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 34948864 - 34948824
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    |||||||||||||||||| |||| |||| ||||||||||||    
T  34948864 aaaataattgttactttagaataccaatgcaatatttatta 34948824  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 15359265 - 15359225
Alignment:
Q  103 aaaataattgttactttaaaatatcaatacaatatttatta 143  Q
    |||||||||||||||||| ||||||||| || |||||||||    
T  15359265 aaaataattgttactttagaatatcaatgcagtatttatta 15359225  T

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