View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_low_15 (Length: 238)
Name: NF19147_low_15
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2923738 - 2923519
Alignment:
| Q |
1 |
attactacaattccatatggaatggctgtctggtcaactggtattggcactcgtccatttatcaaagatttcatggcccaaattggtcaggtgtgttgtt |
100 |
Q |
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| T |
2923738 |
attactacaattccatatggaatggctgtctggtcaactggtattggcactcgtccatttatcaaagatttcatggcccaaattggtcaggtgtgttgtt |
2923639 |
T |
|
| Q |
101 |
gagaaatttatagttatacagttcaaaattccatttcatttctattcactgagcatgcattgtctcttctgaacaggctagccggcgtgctctagctact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2923638 |
gagaaatttatagttatacagttcaaaattccatttcatttctattcactgagcatgcattgtctcttctgaacaggctagccggcgtgctctagctact |
2923539 |
T |
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| Q |
201 |
gatgaatggttgagagtcga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
2923538 |
gatgaatggttgagagtcga |
2923519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 2908596 - 2908414
Alignment:
| Q |
36 |
aactggtattggcactcgtccatttatcaaagattt-catggcccaaattggtcaggtgtgttgttgagaaatttatagttatacagttcaaaattccat |
134 |
Q |
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|||||||||||||||| |||||||||| |||||||| |||| | ||| ||||| ||||||||||||||||||||| | ||||||| || | |||||||| |
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| T |
2908596 |
aactggtattggcacttgtccatttattaaagattttcatg-ctcaagttggttaggtgtgttgttgagaaatttgcaattatacatttgagaattccat |
2908498 |
T |
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| Q |
135 |
ttcattt-ctattcactgagcatgcattgtctcttctgaacaggctagccggcgtgctctagctactgatgaatggttgagagt |
217 |
Q |
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| T |
2908497 |
ttcattttctattcactaagcatgtattgtctcttctgaactggctggcagacgtgctctagcaattgatgaatggttgagagt |
2908414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 36127275 - 36127371
Alignment:
| Q |
1 |
attactacaattccatatggaatggctgtctggtcaactggtattggcactcgtccatttatcaaagatttcatggcccaaattggtcaggtgtgtt |
97 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| | ||||||||||||||||||| |
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| T |
36127275 |
attactactattccatatggaatggctgtctggtcaactggtattggcactcgtccattcataaaagattttatgacacaaattggtcaggtgtgtt |
36127371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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