View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_low_3 (Length: 409)
Name: NF19147_low_3
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_low_3 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 713 - 443
Alignment:
| Q |
18 |
cctaattctgccattgttcttcagactaaacttttgatga---gtacaacacatgcttcaatattgctttta--gagttgaggtttggaaaaagagctat |
112 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
713 |
cctaattctgccattgttcttcaaactcaacttttgatgatgagtacaacacattcttcaatattgcttttatagagtcgaggtttggaaaaagagctat |
614 |
T |
|
| Q |
113 |
gaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttacactatactcgattgaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
613 |
gaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactatactcgattgaa |
514 |
T |
|
| Q |
213 |
ctttcttgtccaacgaacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
283 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513 |
ctttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaatagattccatttattccttcattttt |
443 |
T |
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Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 6242411 - 6242256
Alignment:
| Q |
132 |
ggagctatgaaacaatttgcatgagacagtgaccca-taaaaacgtttaatacgaattcgttttacactata---ctcgattgaactttcttgtccaacg |
227 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttcttgtccaacg |
6242312 |
T |
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| Q |
228 |
aacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
283 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242311 |
agcaaagaaaattgaacctgtcccaccaaatagattccatttattccttcattttt |
6242256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 6333784 - 6333961
Alignment:
| Q |
18 |
cctaattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgctttt--------agagttgaggtttggaaaaagagc |
109 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||| |
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| T |
6333784 |
cctaattcagccattgttcttcaaactaaacttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagaga |
6333883 |
T |
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| Q |
110 |
tatgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaat |
187 |
Q |
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| T |
6333884 |
tatgaagaaaaaacagggaaaaagaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaat |
6333961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 6242494 - 6242409
Alignment:
| Q |
18 |
cctaattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgcttt--tagagttgaggtttgga |
101 |
Q |
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| T |
6242494 |
cctaattctgccgttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgcttttatagagttgaggtttgga |
6242409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 6220993 - 6220934
Alignment:
| Q |
21 |
aattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattg |
80 |
Q |
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| T |
6220993 |
aattctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattg |
6220934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 6326331 - 6326368
Alignment:
| Q |
48 |
cttttgatgagtacaacacatgcttcaatattgctttt |
85 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
6326331 |
cttttgatgagtacaacacattcttcaatattgctttt |
6326368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 6330641 - 6330676
Alignment:
| Q |
159 |
agtgacccataaaaacgtttaatacgaattcgtttta |
195 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6330676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 6347119 - 6347154
Alignment:
| Q |
159 |
agtgacccataaaaacgtttaatacgaattcgtttta |
195 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6347154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 36807230 - 36807309
Alignment:
| Q |
287 |
aggagatagagcgtgagac--aggtttgcaaaactgaatatcctttattaaagcaaaatggctaatatatagcctttaca |
364 |
Q |
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|||||||||| ||||| || |||||||| |||||| ||| ||||||||||||||| ||||||||||||| | |||||| |
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| T |
36807230 |
aggagatagatcgtgacactcaggtttgcgaaactgggtattctttattaaagcaaagtggctaatatataacatttaca |
36807309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
159 |
agtgacccataaaaacgtttaatacgaattcgttttacacta |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| |
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| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
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