View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19147_low_4 (Length: 384)

Name: NF19147_low_4
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19147_low_4
NF19147_low_4
[»] scaffold2079 (1 HSPs)
scaffold2079 (35-290)||(141-396)
[»] chr7 (1 HSPs)
chr7 (38-289)||(6241962-6242208)
[»] chr2 (7 HSPs)
chr2 (41-108)||(15641840-15641907)
chr2 (154-193)||(10850715-10850754)
chr2 (154-193)||(10878229-10878268)
chr2 (55-105)||(15622006-15622057)
chr2 (55-105)||(15643846-15643897)
chr2 (55-105)||(15652896-15652947)
chr2 (38-108)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (155-193)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (44-108)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 35 - 290
Target Start/End: Original strand, 141 - 396
Alignment:
Q  35 cggtgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgatnnnnnnngtgaatataaaaga 134  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |||        |||||||||||||    
T  141 cggtgtagcaaatcaattttgtaggaaaacctctttgaagtttggagaaagaaatagtctcttgcaaaataacatggataaaaaaaatgaatataaaaga 240  T
Q  135 atattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgccc 234  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  241 atattttggaacgcaggcactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgccc 340  T
Q  235 ataggtgaccaacataaattgcaaattatgggactatcctcaaatgcacaagttgg 290  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  341 ataggtgaccaacatgaattgcaaattatgcgactatgctcaaatgcacaagttgg 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 6241962 - 6242208
Alignment:
Q  38 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgat--nnnnnnngtgaatataaaagaa 135  Q
    ||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||| | ||||         |||||| ||||||||    
T  6241962 tgtagcaaatcaattttttaagaaaacctctttgaagtttggagaaagagatagtctcttgcaaaataataacgataaaaaaaaagtgaatgtaaaagaa 6242061  T
Q  136 tattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgccca 235  Q
    ||||||| ||||  | ||||||||||||||||||||||| ||| ||||||||||||| ||||       |||||||||||||||||| |||||||| |||    
T  6242062 tattttgaaacgtgggcactacttttttgcaatattaagttagtctactatacttaaccggg-------tttctcatattgcgtaccgcgaatccgtcca 6242154  T
Q  236 taggtgaccaacataaattgcaaattatgggactatcctcaaatgcacaagttg 289  Q
    || |||| |||||| |||||||||||||| |||||| |||||||| ||||||||    
T  6242155 tacgtgatcaacatgaattgcaaattatgtgactatgctcaaatgaacaagttg 6242208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 15641840 - 15641907
Alignment:
Q  41 agcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 108  Q
    ||||||| |||| ||||||||||| ||||||||||| |||| ||||||  | ||||||||||||||||    
T  15641840 agcaaataaattctgtaggaaaacatctttgaagcttggaggaagagaacgcctcttgcaaaataaca 15641907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 10850754 - 10850715
Alignment:
Q  154 ctacttttttgcaatattaagatagcctactatacttaat 193  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10850754 ctacctttttgcaatattaagatagcttactatacttaat 10850715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 10878268 - 10878229
Alignment:
Q  154 ctacttttttgcaatattaagatagcctactatacttaat 193  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10878268 ctacctttttgcaatattaagatagcttactatacttaat 10878229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15622006 - 15622057
Alignment:
Q  55 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 105  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15622006 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15622057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15643846 - 15643897
Alignment:
Q  55 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 105  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15643846 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15643897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 15652896 - 15652947
Alignment:
Q  55 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 105  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15652896 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15652947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 43724943 - 43724873
Alignment:
Q  38 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 108  Q
    |||||||||| | |||||  ||||||||| ||| ||| | |||||||||||  ||||||||||||||||||    
T  43724943 tgtagcaaataatttttgcgggaaaacctatttaaagtttggagaaagagaacgtctcttgcaaaataaca 43724873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 16724110 - 16724148
Alignment:
Q  155 tacttttttgcaatattaagatagcctactatacttaat 193  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  16724110 tacttttttgcaatattaagatagtttactatacttaat 16724148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 10682732 - 10682669
Alignment:
Q  44 aaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 108  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||   | |||||||||||||||    
T  10682732 aaataaattttgtag-aaaatctctttgaagcttggagaaagagaacatgtcttgcaaaataaca 10682669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University