View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_low_6 (Length: 368)
Name: NF19147_low_6
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 52287846 - 52287496
Alignment:
| Q |
18 |
ctagagagtttgagttccaaatgtcttccattgttcaagagaaagaaccaacaacttcaccagctgatgagcttttctacaaaggaaaactcctccccct |
117 |
Q |
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| T |
52287846 |
ctagagagtttgagttccaaatgtcttccattgttcaagagaaagaaccaacaacttcaccagctgatgagcttttctacaaaggaaaactcctccccct |
52287747 |
T |
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| Q |
118 |
tcaccttccacctcggttacaaatggttgaaaaactccttcaaaaccctcacaaaccttttgaggttgaaaaagatatctttgaagagttctatagcact |
217 |
Q |
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| T |
52287746 |
tcaccttccacctcggttacaaatggttgaaaaactccttcaaaaccctcacaaaccttttgaggttgaaaaagatatctttgaagagttctatagcact |
52287647 |
T |
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| Q |
218 |
ccattagccactactacttttacaacgccgatcaccggcacaccatttgagtcctgcaatatttcaccatctgattcttgtcaagttagtcgagaactaa |
317 |
Q |
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| T |
52287646 |
ccattagccactactacttttacaacgccgatcaccggcacaccatttgagtcctgcaatatttcaccatctgattcttgtcaagttagtcgagaactaa |
52287547 |
T |
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| Q |
318 |
atgccgacgagtattataacctcgactaccacacaactgatacaagtggat |
368 |
Q |
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| T |
52287546 |
atgccgaagagtattataacctcgactaccacacaacggatacaagtggat |
52287496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 29063005 - 29063048
Alignment:
| Q |
80 |
gctgatgagcttttctacaaaggaaaactcctcccccttcacct |
123 |
Q |
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| T |
29063005 |
gctgatgatctcttctacaaaggaaaactcctccctcttcacct |
29063048 |
T |
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