View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19147_low_8 (Length: 304)

Name: NF19147_low_8
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19147_low_8
NF19147_low_8
[»] chr3 (27 HSPs)
chr3 (20-228)||(24511994-24512202)
chr3 (180-229)||(52924433-52924482)
chr3 (181-228)||(3584005-3584052)
chr3 (181-228)||(15287567-15287614)
chr3 (181-228)||(24515014-24515061)
chr3 (186-228)||(47571196-47571238)
chr3 (186-228)||(49349676-49349718)
chr3 (180-228)||(20807937-20807985)
chr3 (180-227)||(9830573-9830620)
chr3 (186-229)||(53344747-53344790)
chr3 (186-228)||(47571945-47571987)
chr3 (181-227)||(54308454-54308500)
chr3 (184-229)||(53344016-53344061)
chr3 (180-228)||(4706956-4707004)
chr3 (180-228)||(20808607-20808655)
chr3 (181-229)||(41419620-41419668)
chr3 (189-229)||(47808361-47808401)
chr3 (184-228)||(47809117-47809161)
chr3 (180-228)||(49350270-49350318)
chr3 (181-229)||(53242665-53242713)
chr3 (181-228)||(9831263-9831310)
chr3 (181-228)||(14746041-14746088)
chr3 (181-236)||(16076202-16076257)
chr3 (181-228)||(43453439-43453486)
chr3 (181-228)||(43454162-43454209)
chr3 (181-222)||(51920720-51920761)
chr3 (196-232)||(46595871-46595907)
[»] chr7 (34 HSPs)
chr7 (27-229)||(28007156-28007357)
chr7 (27-170)||(20568024-20568167)
chr7 (180-229)||(44120357-44120406)
chr7 (181-229)||(35892304-35892352)
chr7 (181-228)||(28007814-28007861)
chr7 (181-228)||(41965778-41965825)
chr7 (179-229)||(41358970-41359020)
chr7 (179-228)||(767136-767185)
chr7 (180-221)||(34807935-34807976)
chr7 (179-228)||(41617192-41617241)
chr7 (181-226)||(44876935-44876980)
chr7 (181-233)||(3849592-3849644)
chr7 (181-228)||(767967-768014)
chr7 (183-229)||(46491691-46491737)
chr7 (179-228)||(36611493-36611542)
chr7 (179-228)||(41358311-41358360)
chr7 (181-229)||(2888179-2888227)
chr7 (181-229)||(24874579-24874627)
chr7 (181-229)||(41965111-41965159)
chr7 (184-228)||(42818557-42818601)
chr7 (181-228)||(3314955-3315002)
chr7 (181-228)||(3850367-3850414)
chr7 (180-226)||(8754175-8754221)
chr7 (186-228)||(17114145-17114187)
chr7 (159-229)||(18568998-18569068)
chr7 (179-229)||(24873750-24873800)
chr7 (181-223)||(36611556-36611598)
chr7 (187-228)||(3315470-3315511)
chr7 (187-231)||(8593984-8594029)
chr7 (159-228)||(18652891-18652960)
chr7 (180-213)||(44121083-44121116)
chr7 (180-228)||(8755117-8755165)
chr7 (180-224)||(38648397-38648441)
chr7 (181-229)||(42817797-42817845)
[»] chr2 (14 HSPs)
chr2 (27-219)||(29388079-29388270)
chr2 (180-228)||(30201988-30202036)
chr2 (181-228)||(1141300-1141347)
chr2 (181-228)||(7754968-7755015)
chr2 (181-230)||(29387422-29387471)
chr2 (181-229)||(20606922-20606970)
chr2 (181-229)||(24394886-24394934)
chr2 (186-229)||(127741-127784)
chr2 (181-228)||(44296860-44296907)
chr2 (186-228)||(44986812-44986854)
chr2 (186-228)||(44987545-44987587)
chr2 (184-228)||(7754012-7754056)
chr2 (181-229)||(10173935-10173983)
chr2 (184-228)||(18537497-18537541)
[»] chr5 (20 HSPs)
chr5 (84-220)||(4083573-4083708)
chr5 (180-228)||(38129126-38129174)
chr5 (183-228)||(4082993-4083038)
chr5 (166-227)||(15561411-15561472)
chr5 (179-228)||(24565573-24565622)
chr5 (179-228)||(24606609-24606658)
chr5 (179-228)||(35524876-35524925)
chr5 (186-230)||(2029053-2029097)
chr5 (181-229)||(39466884-39466932)
chr5 (181-228)||(23253487-23253534)
chr5 (181-228)||(39937907-39937954)
chr5 (187-233)||(20476123-20476169)
chr5 (179-228)||(4095112-4095160)
chr5 (181-230)||(16195130-16195179)
chr5 (181-230)||(35524120-35524169)
chr5 (183-228)||(40372163-40372208)
chr5 (186-230)||(33086727-33086771)
chr5 (180-228)||(38129843-38129891)
chr5 (189-228)||(27345928-27345967)
chr5 (187-228)||(23257319-23257360)
[»] chr4 (31 HSPs)
chr4 (100-228)||(35605991-35606118)
chr4 (180-228)||(25725808-25725856)
chr4 (181-230)||(14527577-14527626)
chr4 (179-228)||(24666129-24666178)
chr4 (178-228)||(36248399-36248449)
chr4 (181-235)||(38519188-38519242)
chr4 (180-229)||(6258146-6258195)
chr4 (184-229)||(34450814-34450859)
chr4 (165-228)||(6056984-6057047)
chr4 (181-228)||(13924793-13924840)
chr4 (181-235)||(13925650-13925704)
chr4 (186-228)||(34451443-34451485)
chr4 (181-226)||(53778416-53778461)
chr4 (179-231)||(24666851-24666903)
chr4 (181-229)||(26354233-26354281)
chr4 (184-228)||(42792775-42792819)
chr4 (181-224)||(18363654-18363697)
chr4 (181-228)||(35606642-35606689)
chr4 (181-224)||(36599231-36599274)
chr4 (181-228)||(51387126-51387173)
chr4 (179-229)||(18362934-18362984)
chr4 (181-227)||(20143280-20143326)
chr4 (187-233)||(21837384-21837430)
chr4 (191-229)||(34941501-34941539)
chr4 (179-229)||(36599942-36599992)
chr4 (179-228)||(25055109-25055158)
chr4 (179-231)||(2460844-2460896)
chr4 (181-229)||(21281162-21281210)
chr4 (180-228)||(36249147-36249195)
chr4 (184-228)||(47157383-47157427)
chr4 (184-228)||(52129421-52129465)
[»] chr8 (23 HSPs)
chr8 (179-229)||(22632967-22633017)
chr8 (179-227)||(22632323-22632371)
chr8 (186-230)||(42094007-42094051)
chr8 (190-228)||(9277792-9277830)
chr8 (189-250)||(42094753-42094814)
chr8 (180-228)||(16911046-16911094)
chr8 (181-229)||(26847096-26847144)
chr8 (189-229)||(44656326-44656366)
chr8 (181-228)||(5434032-5434079)
chr8 (180-232)||(42663997-42664049)
chr8 (181-228)||(4402288-4402335)
chr8 (181-228)||(26847722-26847769)
chr8 (181-228)||(27243446-27243493)
chr8 (181-228)||(27255021-27255068)
chr8 (181-228)||(35399944-35399991)
chr8 (181-228)||(36403026-36403073)
chr8 (181-231)||(1597019-1597069)
chr8 (179-228)||(5434768-5434817)
chr8 (183-228)||(35399178-35399223)
chr8 (186-230)||(202575-202619)
chr8 (186-230)||(317412-317456)
chr8 (184-228)||(42663277-42663321)
chr8 (181-237)||(44376634-44376690)
[»] chr1 (18 HSPs)
chr1 (179-229)||(26240113-26240163)
chr1 (179-229)||(26240870-26240920)
chr1 (181-228)||(12449313-12449360)
chr1 (181-228)||(50657142-50657189)
chr1 (186-228)||(16449555-16449597)
chr1 (186-228)||(16459129-16459171)
chr1 (180-230)||(24848426-24848476)
chr1 (183-233)||(31109234-31109284)
chr1 (183-228)||(31116687-31116732)
chr1 (180-228)||(24847783-24847831)
chr1 (184-228)||(33357733-33357777)
chr1 (181-228)||(43552993-43553040)
chr1 (181-223)||(34026971-34027013)
chr1 (187-224)||(14166914-14166951)
chr1 (179-228)||(51547592-51547641)
chr1 (181-225)||(5491337-5491381)
chr1 (189-229)||(27745555-27745595)
chr1 (184-228)||(27746162-27746206)
[»] chr6 (5 HSPs)
chr6 (179-228)||(16718993-16719042)
chr6 (189-230)||(34423580-34423621)
chr6 (181-233)||(2138472-2138524)
chr6 (189-229)||(34423373-34423413)
chr6 (181-228)||(10966381-10966428)
[»] scaffold0627 (1 HSPs)
scaffold0627 (181-229)||(6463-6511)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 24512202 - 24511994
Alignment:
Q  20 gagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggactactgcaaaactgcaaattaaagaggagaggagaagaaagaaaagagat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24512202 gagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatactgcaaaactgcaaattaaagaggagaggagaagaaagaaaagagat 24512103  T
Q  120 caagtgcaggaaggtgcatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcacccta 219  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24512102 caagttcaggaaggtgcatgataaaaactatggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcacccta 24512003  T
Q  220 gaatccacc 228  Q
     ||||||||    
T  24512002 aaatccacc 24511994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 52924433 - 52924482
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  52924433 atggtgcaccggtgagggacttaattgctccctcaccttagaatccacct 52924482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 3584052 - 3584005
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  3584052 tggtacaccggtgagggatttaattgctccctcaccctagaatccacc 3584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 15287614 - 15287567
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  15287614 tggtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 24515014 - 24515061
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24515014 tggtccaccggtgagggacttaataactccctcaccctagaatccacc 24515061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 20807985 - 20807937
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  20807985 atggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 9830620 - 9830573
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccac 227  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||    
T  9830620 atggtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 53344747 - 53344790
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  53344747 caccggtgagggacttgattgatccctcaccctagaatccacct 53344790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 47571945 - 47571987
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  47571945 caccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 54308500 - 54308454
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccac 227  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  54308500 tggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 53344061 - 53344016
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacct 53344016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 4706956 - 4707004
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||||||||| |  ||||||||||||||||||||    
T  4706956 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 20808607 - 20808655
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||||||| |||  ||||||||||||||||||||    
T  20808607 atggtacaccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 41419620 - 41419668
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  41419620 tggtccaccggtgagggacctaattggcccctcacactagaatccacct 41419668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 47808401 - 47808361
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  47808401 cggtgagggacttgattgatccctcaccctagaatccacct 47808361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 47809117 - 47809161
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||    
T  47809117 tccaccggtgagggacttgattgatccctcaccccagaatccacc 47809161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 49350270 - 49350318
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| |||||| ||||||||||||||  ||||||||||||||||||||    
T  49350270 atggttcaccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 53242713 - 53242665
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| ||||||||||||||| | |||||||||| |||||||||    
T  53242713 tggtccaccgatgagggacttaattgattcctcaccctataatccacct 53242665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 9831263 - 9831310
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||| ||||||||||||||||  ||||||||| ||||||||||    
T  9831263 tggtccaccagtgagggacttaattggaccctcaccccagaatccacc 9831310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 14746088 - 14746041
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||| |||||| |||||||  ||||||||||||||||||||    
T  14746088 tggtccaccggggagggatttaattggaccctcaccctagaatccacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 16076257 - 16076202
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaatatt 236  Q
    |||||||  |||||||||| ||||||  ||||||||||||||||||||||| ||||    
T  16076257 tggtccattggtgagggacctaattggaccctcaccctagaatccaccttattatt 16076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 43453486 - 43453439
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||| |||||||||| |||||||  ||||||||||||||||||||    
T  43453486 tggtccagcggtgagggatttaattggaccctcaccctagaatccacc 43453439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 43454162 - 43454209
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||| |||||||||| ||||||  ||||||||||||||||||||    
T  43454162 tggtccacaggtgagggacctaattggaccctcaccctagaatccacc 43454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 51920761 - 51920720
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaa 222  Q
    ||||||| ||||||||||||||||||  ||||||||||||||    
T  51920761 tggtccatcggtgagggacttaattggaccctcaccctagaa 51920720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 46595871 - 46595907
Alignment:
Q  196 ggacttaattgctccctcaccctagaatccaccttaa 232  Q
    |||||||||||  ||||||||||||||||||||||||    
T  46595871 ggacttaattggaccctcaccctagaatccaccttaa 46595907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 28007357 - 28007156
Alignment:
Q  27 gaacgacaatgggatttgagaaggtgatagatgaaaacaaggactactgcaaaactg--caaattaaagaggagaggagaagaaagaaaagagatcaagt 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||     |||| |||   ||||| |||||||| ||||||||||| ||||||||||||||    
T  28007357 gaacgacaatgagatttgagaaggtgatagatgaaaacaaggaag---gcaacactaaacaaatcaaagaggaaaggagaagaaataaaagagatcaagt 28007261  T
Q  125 gcaggaaggtgcatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatc 224  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28007260 gcatgaaggtgtatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatc 28007161  T
Q  225 cacct 229  Q
    |||||    
T  28007160 cacct 28007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 20568024 - 20568167
Alignment:
Q  27 gaacgacaatgggatttgagaaggtgatagatgaaaacaaggactactgcaaaactgcaaattaaagaggagaggagaagaaagaaaagagatcaagtgc 126  Q
    |||||||||| |||||||| ||||||||||||| |||||||||   |  ||| |  | ||||||||||||| |  |||||||||||||||| ||||||||    
T  20568024 gaacgacaataggatttgaaaaggtgatagatgtaaacaaggaaggcatcaatagagaaaattaaagaggataaaagaagaaagaaaagaggtcaagtgc 20568123  T
Q  127 aggaaggtgcatgataaaaactgtggactcatttaatctaatgg 170  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  20568124 aggaaggtatatgataaaaactgtggactcatttaatctaatgg 20568167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 44120406 - 44120357
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  44120406 atggtacaccggtgagggacttaattgctccctcaccttagaatccacct 44120357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 35892304 - 35892352
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  35892304 tggtacaccggtgagggatttaattgctccctcaccctagaatccacct 35892352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 28007814 - 28007861
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28007814 tggtccaccggtgagggacttaatagctccatcaccctagaatccacc 28007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 41965778 - 41965825
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  41965778 tggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 41358970 - 41359020
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  41358970 catggtccactggtgatggacttaattgatccctcaccctagaatccacct 41359020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 767185 - 767136
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  767185 catgatccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 34807976 - 34807935
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctaga 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  34807976 atggtccaccggtgagggacttaattgctccctcaccttaga 34807935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 41617241 - 41617192
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  41617241 catggtccaccggtgagggacttaattgatcactcactctagaatccacc 41617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 44876935 - 44876980
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatcca 226  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  44876935 tggtccatcggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 3849644 - 3849592
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaat 233  Q
    |||||||||||||||||| || |||| ||||||| ||||||||||||||||||    
T  3849644 tggtccaccggtgagggatttgattgatccctcatcctagaatccaccttaat 3849592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 767967 - 768014
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  767967 tggtccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 46491691 - 46491737
Alignment:
Q  183 gtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||    
T  46491691 gtccaccggtgagggacttagttgaaccctcaccctagaatccacct 46491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 36611493 - 36611542
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||| || |||||||  ||||||||||||||||||||    
T  36611493 catggtccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 41358360 - 41358311
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||| |||||||||||||||||| ||||||| || ||||||||||    
T  41358360 catggtccatcggtgagggacttaattgatccctcatccaagaatccacc 41358311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 2888227 - 2888179
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  2888227 tggtccaccggtgaaggacttaatagctctctcaccctaaaatccacct 2888179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 24874579 - 24874627
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| |||||||| ||||||  |||||||||||||||||||||    
T  24874579 tggtccaccgatgagggacctaattgaaccctcaccctagaatccacct 24874627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 41965159 - 41965111
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||  |||||||||||||||  |||||||||||||||||||||    
T  41965159 tggtccaccaatgagggacttaattggaccctcaccctagaatccacct 41965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 3315002 - 3314955
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| |||||||||||||||||||||  |||||||| |||||||||||    
T  3315002 tggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 3850367 - 3850414
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||| |||||||  ||||||||||||| ||||||    
T  3850367 tggtccaccggtgagggatttaattggcccctcaccctagattccacc 3850414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 8754221 - 8754175
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatcca 226  Q
    ||||| |||||||||| |||||||||||| ||||||| |||||||||    
T  8754221 atggtacaccggtgagagacttaattgcttcctcaccttagaatcca 8754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 17114187 - 17114145
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| |||||||||||||||  ||||||||||||||||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 18568998 - 18569068
Alignment:
Q  159 ttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||| | |   ||||||||||||||||||| ||||| |  || ||||||||||||||||||    
T  18568998 ttaatctaatggttttaaataatggtccaccggtgagggatttaataggaccttcaccctagaatccacct 18569068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 24873800 - 24873750
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| | |||||||| ||||||  |||||||||||||||||||||    
T  24873800 catggtccactgatgagggacctaattggaccctcaccctagaatccacct 24873750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 36611598 - 36611556
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaat 223  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  36611598 tggttcaccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 3315470 - 3315511
Alignment:
Q  187 accggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||  |||||||| |||||||||||    
T  3315470 accggtgagggacttaattgagccctcaccttagaatccacc 3315511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 8593984 - 8594029
Alignment:
Q  187 accggtgagggacttaattgct-ccctcaccctagaatccacctta 231  Q
    |||||||||||||||||||  | |||||||||||||||||||||||    
T  8593984 accggtgagggacttaattaattccctcaccctagaatccacctta 8594029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 18652960 - 18652891
Alignment:
Q  159 ttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||| | |   ||||||||||||||||||| ||||| |  || |||||||||||||||||    
T  18652960 ttaatctaatggttttaaataatggtccaccggtgagggatttaataggaccttcaccctagaatccacc 18652891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 44121083 - 44121116
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctc 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  44121083 atggtacaccggtgagggacttaattgctccctc 44121116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 8755117 - 8755165
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||| |||||| |||||||||| ||||| |||||    
T  8755117 atggtacaccggtgagggatttaatttctccctcaccttagaacccacc 8755165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 38648397 - 38648441
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatc 224  Q
    ||||| || |||||||||||||||||||||||||| | |||||||    
T  38648397 atggtacatcggtgagggacttaattgctccctcatcttagaatc 38648441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 42817845 - 42817797
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| |||||||||||||||  || |||||||||||| |||||    
T  42817845 tggtccaccgatgagggacttaattggaccatcaccctagaattcacct 42817797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 27 - 219
Target Start/End: Original strand, 29388079 - 29388270
Alignment:
Q  27 gaacgacaatgggatttgagaaggtgatagatgaaaacaaggactactgcaaaactgcaaattaaagaggagaggagaagaaagaaaagagatcaagtgc 126  Q
    |||| ||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||  |||||||||||||||||||||||||||||| | |    
T  29388079 gaacaacaatgggatttgagaaggtgatagataaaaacaaggaagacagcaaaactgcaaattagggaggagaggagaagaaagaaaagagatcaaatac 29388178  T
Q  127 aggaaggtgcatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcacccta 219  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  29388179 aggaaggtgcatgataaaaa-tgtggactcatttaatctaatagttgttagacatagtccactagtgagggacttaattgctccctcacccta 29388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 30201988 - 30202036
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30201988 atggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 1141347 - 1141300
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  1141347 tggtccaccggtgagggacttcattgctccctcaccttagaatccacc 1141300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 7754968 - 7755015
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  7754968 tggtccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 29387471 - 29387422
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||||||||||||||| ||||||| ||||||||| |||||||| ||||||    
T  29387471 tggtccaccggtgaggaacttaatagctccctcatcctagaattcacctt 29387422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 20606922 - 20606970
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||| |||||||||||||||||||||  ||||||||||||||| |||||    
T  20606922 tggttcaccggtgagggacttaattgaaccctcaccctagaattcacct 20606970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 24394886 - 24394934
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| ||||||||||||||| |||| ||| |||||||||||||    
T  24394886 tggtccaccgatgagggacttaattgatcccccactctagaatccacct 24394934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 127741 - 127784
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||| |||||||||||  |||||||||||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacct 127784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 44296907 - 44296860
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||| ||||||||||||||||  ||||||||||||||| ||||    
T  44296907 tggtccaccagtgagggacttaattggaccctcaccctagaattcacc 44296860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 44986854 - 44986812
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||||| |||||||||||||||| ||||    
T  44986854 caccgatgagggacttaattgatccctcaccctagaattcacc 44986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 44987545 - 44987587
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| ||||| |||||||||| |||||||||||||||||||||    
T  44987545 caccagtgagagacttaattgatccctcaccctagaatccacc 44987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 7754056 - 7754012
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||| ||||||| ||||||  ||||||||||||||||||||    
T  7754056 tccaccggggagggacctaattggaccctcaccctagaatccacc 7754012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 10173983 - 10173935
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||| ||||||||||||||||||  |  |||||||||||||||||||||    
T  10173983 tggttcaccggtgagggacttaacagaaccctcaccctagaatccacct 10173935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 18537497 - 18537541
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||  |||||| | |||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 4083573 - 4083708
Alignment:
Q  84 caaattaaagaggagaggagaagaaagaaaagagatcaagtgcaggaaggtgcatgataaaaactgtggactcatttaatctaatggttgttagacatgg 183  Q
    ||||| ||||||||| |||||||||| ||||| |||||||||||| |||||| ||||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  4083573 caaatgaaagaggag-ggagaagaaataaaagtgatcaagtgcagaaaggtgtatgataaaatctggggactcatttaatttaaaggttgttagacatgg 4083671  T
Q  184 tccaccggtgagggacttaattgctccctcaccctag 220  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4083672 tccaccgatgagggacttaattgctccctcaccctag 4083708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 38129174 - 38129126
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  38129174 atggtacaccggtgagggacttaattgctccctcaccttagaatccacc 38129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 4083038 - 4082993
Alignment:
Q  183 gtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||    
T  4083038 gtccaccgatgagggacttaatagctccctcaccctagaatccacc 4082993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 15561472 - 15561411
Alignment:
Q  166 aatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccac 227  Q
    |||||||||| || ||||||||||||||||||||||| | |  |||||||||||||||||||    
T  15561472 aatggttgttcgaaatggtccaccggtgagggacttagtagagccctcaccctagaatccac 15561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 24565622 - 24565573
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  24565622 catggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 24606658 - 24606609
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  24606658 catggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 35524876 - 35524925
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  35524876 catggtccaccggtgagaaacttaattgatccctcaccctagaatccacc 35524925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 2029053 - 2029097
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccacctt 2029097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 39466932 - 39466884
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  39466932 tggtccaccggtgagggacttaattggaccctcaccctagaattcacct 39466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 23253487 - 23253534
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||    
T  23253487 tggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 39937907 - 39937954
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  39937907 tggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 20476123 - 20476169
Alignment:
Q  187 accggtgagggacttaattgctccctcaccctagaatccaccttaat 233  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||    
T  20476123 accggtgagggacttaattgatccctcaccctaaaatccaccctaat 20476169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 4095160 - 4095112
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  4095160 catggtccaccggtgagagacttaattgat-cctcaccctagaatccacc 4095112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 16195130 - 16195179
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||| |||| |||| ||||||||||| |||||||||||||||||||||||    
T  16195130 tggtacaccagtgatggacttaattgatccctcaccctagaatccacctt 16195179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 35524169 - 35524120
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    ||||||||||||||||||||||||||  | |||| |||||||||||||||    
T  35524169 tggtccaccggtgagggacttaattgaactctcatcctagaatccacctt 35524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 40372163 - 40372208
Alignment:
Q  183 gtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||    
T  40372163 gtccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 33086771 - 33086727
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  33086771 caccggtgaaggacttaattgatccctcatcctagaatccacctt 33086727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 38129843 - 38129891
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||||||||    
T  38129843 atggtacaccggtgagggacttaattgttccctcaccttaaaatccacc 38129891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 27345928 - 27345967
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  27345928 cggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 23257360 - 23257319
Alignment:
Q  187 accggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  23257360 accggtgagggacttaattggaccctcactctagaatccacc 23257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 35606118 - 35605991
Alignment:
Q  100 ggagaagaaagaaaagagatcaagtgcaggaaggtgcatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggac 199  Q
    |||||||||||||||  |||||||||||| |||||| |||||||||| || ||||||||| ||||||| |||||||||||||||||||||  ||||||||    
T  35606118 ggagaagaaagaaaactgatcaagtgcagaaaggtgtatgataaaaattggggactcatt-aatctaaaggttgttagacatggtccaccaatgagggac 35606020  T
Q  200 ttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||||||    
T  35606019 ttaattgctccctcaccctagaatccacc 35605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 25725808 - 25725856
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25725808 atggtccaccggtgagggacttaattgctccctcaccctagactccacc 25725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 14527577 - 14527626
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  14527577 tggttcaccggtgagggacttaattgatccctcaccctagaatccacctt 14527626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 24666178 - 24666129
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  24666178 catggttcaccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 36248449 - 36248399
Alignment:
Q  178 acatggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  36248449 acatggtccaccggtgagggatttaattgctccctcaccttagaattcacc 36248399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 38519188 - 38519242
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaatat 235  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| || |||||    
T  38519188 tggtacaccggtgagggacttaattgctccttcaccctagaatccatctcaatat 38519242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 6258146 - 6258195
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  6258146 atggtacatcggtgagggacttaattgctccctcaccttagaatccacct 6258195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 34450859 - 34450814
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcacct 34450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 6056984 - 6057047
Alignment:
Q  165 taatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||| ||  |||||||||||||||||||||| | |  ||||||||||||||||||||    
T  6056984 taatggttgttcgaagtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 13924840 - 13924793
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  13924840 tggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 13925650 - 13925704
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaatat 235  Q
    |||||||||||||||||||||| ||| ||||||||  ||||||||||||| ||||    
T  13925650 tggtccaccggtgagggacttagttgatccctcactttagaatccacctttatat 13925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 34451443 - 34451485
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  34451443 caccggtgaggtacttaattgatccctcaccctagaatccacc 34451485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 53778416 - 53778461
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatcca 226  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||    
T  53778416 tggtccaccggtgagggacttaaatggaccctcaccctagaatcca 53778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 24666851 - 24666903
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacctta 231  Q
    ||||||||||| | ||||||||||||||  ||||||||||| |||||||||||    
T  24666851 catggtccaccagggagggacttaattgaaccctcaccctataatccacctta 24666903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 26354233 - 26354281
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||| ||||||||||||||||  |||||||||||||| ||||||    
T  26354233 tggtccacctgtgagggacttaattgaaccctcaccctagaacccacct 26354281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 42792819 - 42792775
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||    
T  42792819 tccatcggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 18363654 - 18363697
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatc 224  Q
    |||||||||||||||| |||||||||  ||||||||||||||||    
T  18363654 tggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 35606642 - 35606689
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||| ||||||||||| | ||||||||||||||||| |||||    
T  35606642 tggtccaccgatgagggacttagtagctccctcaccctagaacccacc 35606689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 36599274 - 36599231
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatc 224  Q
    |||||||||||||||| |||||||||  ||||||||||||||||    
T  36599274 tggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 51387126 - 51387173
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| |||||||||||||| |||||| |||||||||||| ||||||||    
T  51387126 tggttcaccggtgagggacgtaattgatccctcaccctataatccacc 51387173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 18362984 - 18362934
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||| ||||| |||  |||||||||| ||||||||||||||||||||||    
T  18362984 catggttcaccgatgaaagacttaattgatccctcaccctagaatccacct 18362934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 20143326 - 20143280
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccac 227  Q
    |||| ||||||||||||||||| |||  |||||||||||||||||||    
T  20143326 tggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 21837430 - 21837384
Alignment:
Q  187 accggtgagggacttaattgctccctcaccctagaatccaccttaat 233  Q
    |||||||||||||||| |||  |||||||||||||||||||| ||||    
T  21837430 accggtgagggacttagttggaccctcaccctagaatccaccataat 21837384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 34941539 - 34941501
Alignment:
Q  191 gtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  34941539 gtgagggacttaattgaaccctcaccctagaatccacct 34941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 36599942 - 36599992
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||| ||||| |||  |||||||||| ||||||||||||||||||||||    
T  36599942 catggttcaccgatgaaagacttaattgatccctcaccctagaatccacct 36599992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 25055158 - 25055109
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||  ||||| |||||||||  ||||||||||||||||||||    
T  25055158 catggtccaccaatgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 2460896 - 2460844
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacctta 231  Q
    |||||||||| ||||||||||||| ||   |||||| ||||||||||||||||    
T  2460896 catggtccactggtgagggacttagttcagccctcatcctagaatccacctta 2460844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 21281162 - 21281210
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||| |||||||  ||||||  |||||||||||||||||||||    
T  21281162 tggtccaccgatgagggatctaattggaccctcaccctagaatccacct 21281210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 36249147 - 36249195
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||| |||||||||||||||||| |||| | |||||||||||    
T  36249147 atggttcaccgatgagggacttaattgctctctcatcttagaatccacc 36249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 47157383 - 47157427
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||| |||||||  ||||||||||||||| ||||    
T  47157383 tccaccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 52129465 - 52129421
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||| ||||||||||||||||  |||||||| |||||||||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 22632967 - 22633017
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22632967 catggtccaccggtgagggacttaattgatccctcaccctagaatccacct 22633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 22632371 - 22632323
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccac 227  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22632371 catggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 42094051 - 42094007
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccacctt 42094007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 9277792 - 9277830
Alignment:
Q  190 ggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9277792 ggtgagggacttaattgctccctcaccctagaatccacc 9277830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 42094753 - 42094814
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccaccttaatattaattaatttaattt 250  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |  ||||||||| ||||    
T  42094753 cggtgagggacttaattgatccctcaccctagaattcaccttaaaaaaaattaattttattt 42094814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 16911046 - 16911094
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  16911046 atggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 26847144 - 26847096
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||    
T  26847144 tggttcaccggtgagggacttaattggaccctcaccctagaatccacct 26847096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 44656326 - 44656366
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  44656326 cggtgagggacttaattgctccctcaccttagaatccacct 44656366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 5434079 - 5434032
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||    
T  5434079 tggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 42663997 - 42664049
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaa 232  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||| ||||||||    
T  42663997 atggtccaccagtgagggacttaattgaaccctcaccctaaaattcaccttaa 42664049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 4402288 - 4402335
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| ||||||||||||||||||| |  ||||||||||||||||||||    
T  4402288 tggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 26847722 - 26847769
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||| ||||||||||| ||||||||| ||||||| |||||||||||||    
T  26847722 tggttcaccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 27243493 - 27243446
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  27243493 tggtccaccggtgagggacttaattgatccctcgccttataatccacc 27243446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 27255068 - 27255021
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  27255068 tggtccaccggtgagggacttaattgatccctcgccttataatccacc 27255021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 35399944 - 35399991
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||| || |||| ||||||| |||||||||||||    
T  35399944 tggtccaccggtgagggatttgattgatccctcatcctagaatccacc 35399991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 36403026 - 36403073
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  36403026 tggtccaccggtgagggacctaattggaccctcactctagaatccacc 36403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 1597069 - 1597019
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacctta 231  Q
    ||||||| | |||||| |||||||||||| |||||| ||||||||||||||    
T  1597069 tggtccatcagtgaggaacttaattgctcactcaccttagaatccacctta 1597019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 5434768 - 5434817
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||| |||||||||||||||  | ||||| ||||||||||||    
T  5434768 catggtccaccgatgagggacttaattggactctcactctagaatccacc 5434817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 35399223 - 35399178
Alignment:
Q  183 gtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||| |||||||  ||||||||||||| ||||||    
T  35399223 gtccaccggtgagggatttaattggcccctcaccctagattccacc 35399178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 202619 - 202575
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||||||||||||||||||||  |||||| |||||||| ||||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaattcacctt 202575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 317456 - 317412
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||||||||||||||||||||  |||||| |||||||| ||||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaattcacctt 317412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 42663321 - 42663277
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||| ||||||||||  | ||||||||||||||||||    
T  42663321 tccaccggtgagagacttaattggactctcaccctagaatccacc 42663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 44376690 - 44376634
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaatatta 237  Q
    |||||||||| |||||||| ||||||  ||||| |||||||||||||| | ||||||    
T  44376690 tggtccaccgatgagggacgtaattggaccctcgccctagaatccaccgttatatta 44376634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 26240163 - 26240113
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  26240163 catggttcaccggtgagggacttaattgatccctcaccctagaatccacct 26240113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 26240870 - 26240920
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  26240870 catggtccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 12449313 - 12449360
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  12449313 tggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 50657142 - 50657189
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||    
T  50657142 tggtccaccggtgagggacttaattgctccctcgccttagaatccacc 50657189  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  186 caccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 24848426 - 24848476
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    ||||| ||||||||||||||||||| |  ||||||||||||||||||||||    
T  24848426 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacctt 24848476  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 31109284 - 31109234
Alignment:
Q  183 gtccaccggtgagggacttaattgctccctcaccctagaatccaccttaat 233  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||| ||||    
T  31109284 gtccaccggtgagggacctaattggaccctcaccctagaatccaccgtaat 31109234  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 31116687 - 31116732
Alignment:
Q  183 gtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||    
T  31116687 gtccaccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 24847831 - 24847783
Alignment:
Q  180 atggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| ||||||||||||||||||| |  ||||||||||||||||||||    
T  24847831 atggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 33357733 - 33357777
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||  || |||||||||||||||||||||    
T  33357733 tccaccggtgagggacttatctgatccctcaccctagaatccacc 33357777  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 43552993 - 43553040
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||| |||||| ||||||||||| |||||||||||| ||||||||    
T  43552993 tggtccatcggtgaaggacttaattgatccctcaccctataatccacc 43553040  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 34026971 - 34027013
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaat 223  Q
    |||||||||||||||||||||||||| || ||||| |||||||    
T  34026971 tggtccaccggtgagggacttaattgatctctcactctagaat 34027013  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 14166914 - 14166951
Alignment:
Q  187 accggtgagggacttaattgctccctcaccctagaatc 224  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaatc 14166951  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 51547641 - 51547592
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||| ||||||||||||   || |||||||||||||||||    
T  51547641 catggtccaccggtaagggacttaattaaaccatcaccctagaatccacc 51547592  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 5491337 - 5491381
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatcc 225  Q
    ||||||||||||||||||| ||||||  |||||| ||||||||||    
T  5491337 tggtccaccggtgagggacctaattggaccctcatcctagaatcc 5491381  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 27745595 - 27745555
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||||  |||||||| ||||||||||||    
T  27745595 cggtgagggacttaattgaaccctcaccttagaatccacct 27745555  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 27746162 - 27746206
Alignment:
Q  184 tccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||| |||||||||||||||||  ||||||| ||||||||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 16718993 - 16719042
Alignment:
Q  179 catggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  16718993 catggtccaccggtgagggacttaattgatccgtcaccctagaatccacc 16719042  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 34423580 - 34423621
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccacctt 230  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  34423580 cggtgagggacttaattgcttcctcaccctagaatccacctt 34423621  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 2138524 - 2138472
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccttaat 233  Q
    ||||||||||||||||||| ||||||  ||||||||||||||| |||||||||    
T  2138524 tggtccaccggtgagggacctaattggaccctcaccctagaattcaccttaat 2138472  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 34423413 - 34423373
Alignment:
Q  189 cggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  34423413 cggtgagggacttaattgctccctcacactagaatccacct 34423373  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 10966381 - 10966428
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacc 228  Q
    ||||||||||||||||||| ||||||  || |||||||||||||||||    
T  10966381 tggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 6511 - 6463
Alignment:
Q  181 tggtccaccggtgagggacttaattgctccctcaccctagaatccacct 229  Q
    ||||||| ||||||||||||||||||  |||||||||||||| ||||||    
T  6511 tggtccatcggtgagggacttaattgaaccctcaccctagaacccacct 6463  T

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