View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19147_low_9 (Length: 301)
Name: NF19147_low_9
Description: NF19147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19147_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 45868498 - 45868318
Alignment:
| Q |
72 |
agatagatgatgcacttatgtaccttcggatctgttaaattattgtacaaaaaagtaattaacctacatgtcatttaggatctattagaagatgatattg |
171 |
Q |
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| T |
45868498 |
agatagaagatgcacttatgtaccttcggatctgttaaattattgtacaaaaaagtaattaacctacatgtcatttaggatctattagaagatgatattg |
45868399 |
T |
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| Q |
172 |
atagacttttgattgcaagagaagtaattatatctagtgtcgagtatgttgttatataaactaaatgaattttaaaagtgg |
252 |
Q |
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| T |
45868398 |
atagacttttgattgcaagagaagtaattatatctagtgtcgagtatgttgttatataaactaaatgaattttaaaagtgg |
45868318 |
T |
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