View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19148_high_1 (Length: 1341)

Name: NF19148_high_1
Description: NF19148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19148_high_1
NF19148_high_1
[»] chr4 (22 HSPs)
chr4 (218-551)||(30275152-30275485)
chr4 (643-862)||(30275574-30275793)
chr4 (18-157)||(30274946-30275085)
chr4 (692-990)||(11097966-11098268)
chr4 (692-771)||(11556393-11556472)
chr4 (694-771)||(18220368-18220445)
chr4 (18-153)||(18554495-18554630)
chr4 (18-155)||(16714057-16714194)
chr4 (858-915)||(30279028-30279085)
chr4 (692-889)||(15890014-15890215)
chr4 (383-530)||(11097661-11097806)
chr4 (710-889)||(12229238-12229420)
chr4 (707-889)||(15872437-15872623)
chr4 (674-757)||(16284586-16284670)
chr4 (274-365)||(34634670-34634761)
chr4 (18-149)||(13268227-13268358)
chr4 (695-772)||(18556495-18556572)
chr4 (383-530)||(11556631-11556776)
chr4 (946-1057)||(17337880-17337992)
chr4 (18-67)||(12231097-12231146)
chr4 (18-67)||(16282738-16282787)
chr4 (21-50)||(17339392-17339421)
[»] chr7 (17 HSPs)
chr7 (958-1166)||(41744331-41744538)
chr7 (18-157)||(48379103-48379242)
chr7 (692-777)||(20026443-20026528)
chr7 (663-889)||(13477203-13477432)
chr7 (383-530)||(11655810-11655955)
chr7 (674-801)||(37945374-37945501)
chr7 (18-157)||(13773611-13773750)
chr7 (1225-1339)||(41744176-41744291)
chr7 (715-763)||(4531365-4531413)
chr7 (105-157)||(15864966-15865018)
chr7 (383-530)||(22614372-22614517)
chr7 (946-1057)||(37945650-37945762)
chr7 (722-829)||(15866879-15866986)
chr7 (650-733)||(2889131-2889215)
chr7 (20-82)||(2243275-2243337)
chr7 (1274-1324)||(16068913-16068962)
chr7 (243-356)||(16068059-16068175)
[»] chr2 (13 HSPs)
chr2 (767-963)||(29637297-29637496)
chr2 (692-1056)||(24786334-24786701)
chr2 (243-362)||(18784140-18784259)
chr2 (1220-1326)||(18785110-18785217)
chr2 (1049-1177)||(18784962-18785089)
chr2 (383-546)||(29637658-29637821)
chr2 (714-771)||(44586051-44586108)
chr2 (383-530)||(44585775-44585920)
chr2 (693-771)||(23656030-23656108)
chr2 (18-157)||(18985043-18985187)
chr2 (714-778)||(32251782-32251846)
chr2 (644-730)||(29637503-29637590)
chr2 (389-447)||(20179566-20179624)
[»] chr5 (7 HSPs)
chr5 (248-365)||(24143879-24143996)
chr5 (643-773)||(23960433-23960564)
chr5 (710-770)||(13937393-13937453)
chr5 (383-530)||(24831294-24831437)
chr5 (693-763)||(24831597-24831667)
chr5 (692-801)||(24759207-24759315)
chr5 (18-79)||(24829689-24829750)
[»] chr3 (27 HSPs)
chr3 (385-545)||(19907889-19908049)
chr3 (648-793)||(19908148-19908294)
chr3 (18-157)||(14057453-14057592)
chr3 (18-157)||(17958934-17959073)
chr3 (674-889)||(16359134-16359354)
chr3 (692-888)||(21975547-21975746)
chr3 (692-888)||(21997978-21998177)
chr3 (692-777)||(14481197-14481282)
chr3 (692-777)||(17791344-17791429)
chr3 (692-777)||(19099784-19099869)
chr3 (982-1057)||(5943809-5943884)
chr3 (18-133)||(16932737-16932852)
chr3 (706-801)||(22160233-22160327)
chr3 (706-889)||(19185209-19185393)
chr3 (692-801)||(13926428-13926536)
chr3 (692-801)||(22924301-22924409)
chr3 (18-157)||(14479278-14479417)
chr3 (713-866)||(5943553-5943708)
chr3 (692-793)||(13928826-13928926)
chr3 (383-530)||(17791588-17791733)
chr3 (383-530)||(19100028-19100173)
chr3 (727-829)||(16642704-16642805)
chr3 (18-77)||(16928819-16928878)
chr3 (722-829)||(14054653-14054760)
chr3 (722-829)||(14062382-14062489)
chr3 (939-1005)||(27870331-27870397)
chr3 (216-297)||(21028850-21028930)
[»] chr6 (12 HSPs)
chr6 (692-889)||(8403366-8403570)
chr6 (18-157)||(19544919-19545058)
chr6 (716-1057)||(9191214-9191560)
chr6 (383-530)||(7681874-7682019)
chr6 (692-992)||(14970316-14970620)
chr6 (1228-1334)||(24622355-24622462)
chr6 (692-763)||(7682176-7682247)
chr6 (383-530)||(10641007-10641152)
chr6 (713-759)||(10906324-10906370)
chr6 (17-50)||(7680380-7680413)
chr6 (695-772)||(19546919-19546996)
chr6 (442-529)||(9191738-9191825)
[»] scaffold0091 (2 HSPs)
scaffold0091 (18-157)||(31360-31499)
scaffold0091 (722-829)||(29465-29571)
[»] scaffold0737 (1 HSPs)
scaffold0737 (692-777)||(3239-3324)
[»] scaffold1001 (1 HSPs)
scaffold1001 (383-530)||(1730-1875)
[»] scaffold0094 (2 HSPs)
scaffold0094 (18-157)||(2275-2414)
scaffold0094 (695-884)||(4281-4471)
[»] scaffold0003 (2 HSPs)
scaffold0003 (18-157)||(132893-133032)
scaffold0003 (727-829)||(131189-131290)
[»] chr1 (8 HSPs)
chr1 (18-149)||(51624635-51624766)
chr1 (714-790)||(1566683-1566758)
chr1 (722-829)||(13881859-13881965)
chr1 (722-829)||(51626595-51626702)
chr1 (18-80)||(10390223-10390285)
chr1 (287-324)||(15544312-15544349)
chr1 (18-50)||(24852461-24852493)
chr1 (18-64)||(43154163-43154209)
[»] chr8 (5 HSPs)
chr8 (18-143)||(26858960-26859085)
chr8 (87-153)||(10453914-10453980)
chr8 (692-777)||(29294323-29294408)
chr8 (975-1034)||(29294061-29294120)
chr8 (18-50)||(15728068-15728100)
[»] scaffold0385 (1 HSPs)
scaffold0385 (706-891)||(14563-14751)
[»] scaffold0145 (2 HSPs)
scaffold0145 (674-757)||(13047-13131)
scaffold0145 (18-67)||(14928-14977)
[»] scaffold0524 (1 HSPs)
scaffold0524 (238-324)||(3598-3685)
[»] scaffold0218 (2 HSPs)
scaffold0218 (18-157)||(16707-16846)
scaffold0218 (722-829)||(14784-14890)
[»] scaffold0063 (1 HSPs)
scaffold0063 (18-157)||(25854-25993)
[»] scaffold0166 (1 HSPs)
scaffold0166 (692-801)||(1701-1809)
[»] scaffold0319 (1 HSPs)
scaffold0319 (722-829)||(13172-13278)
[»] scaffold0118 (1 HSPs)
scaffold0118 (692-830)||(10501-10640)
[»] scaffold0048 (1 HSPs)
scaffold0048 (713-771)||(87201-87259)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 218 - 551
Target Start/End: Original strand, 30275152 - 30275485
Alignment:
Q  218 aagcagtgatttcagagattcgagataagtgggagaatcctttcactttacggtaacttattctatcacgggggttgtttaatttttaagatgatgttgt 317  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  30275152 aagcagtgatttcagagattcgaggtaagtgggagaatcatttcactttagggtaacttattctatgacgggggttgtttaattcttaagatgatgttgt 30275251  T
Q  318 tgttatgttgtaaactttgatgagaaaatgatcatgaacgaaggtaatagcggcgagtaatagcgaagatgattgttagataggaatgtataaggtgtaa 417  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  30275252 tgttatgttgtaaactttgatgaggaaatgatcatgaacgaaggtaatagcggcaggtaatagcgaagatgattgttagataggaatgtataaggtgtaa 30275351  T
Q  418 aaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaagacaaaatgtaaaggaagatagggggttgtgtattaa 517  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30275352 aaatggataaagaatagagtgcgatcgaatttagatgattgtggacgatgaaatggacattaagacaaaatgtaaatgaagataggggattgtgtattaa 30275451  T
Q  518 gtaacgaaagatattaaggataataatagcggcg 551  Q
    |||| |||||||||||||||||||||||||||||    
T  30275452 gtaatgaaagatattaaggataataatagcggcg 30275485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 643 - 862
Target Start/End: Original strand, 30275574 - 30275793
Alignment:
Q  643 cgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaa 742  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  30275574 cgactggtaacgagatattaaaaccctaaaatataatgaagttttagtgggaaagttgatgacgtcgaaagtaatgataaggtgaaataataactttaaa 30275673  T
Q  743 ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgttttaatgggaaataatt 842  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  30275674 ttagaatgaagttaagattataggaatggtcggtgttatagatgacgatgaacgtgagacgaagtactacgatataaagttgttttaatgagaaataatt 30275773  T
Q  843 atgaaagaggtaatgacgat 862  Q
    ||||||||| ||||||||||    
T  30275774 atgaaagagataatgacgat 30275793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 2e-65
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 30274946 - 30275085
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30274946 tgtagaatataagttttaaataagtgggggaggggggaagtaaaagaatactgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 30275045  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30275046 agaaacattaggagttagaagtgtcacttttgttgaacgt 30275085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 692 - 990
Target Start/End: Original strand, 11097966 - 11098268
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||  ||| ||||| |     
T  11097966 ggaaagtttctgaagtcaaaattaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggaagatg-cataaatgactac 11098064  T
Q  792 gaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 888  Q
     ||| |||| |  ||||| || || ||||||| |||||| || ||  ||||| |||||| ||  |||||||||||||| | || |||||||||||| |||    
T  11098065 aaacatgagaacaaagtaataagagataaagtcgttttattgagaagaataagtatgaaggaattaatgacgatggtgagttaggacctagttgtaaaga 11098164  T
Q  889 gggaaggcgttataagaattgttaacgaggaagtaagcatctta--aattataatgaagaatatggtatgctattagaataaagtatttagagagcctag 986  Q
    | | || | ||||| ||| || ||| ||  ||||||  ||||||  | | | ||||| ||||| |||||| ||| | |||||||||| ||||| ||||||    
T  11098165 gaggagacattatatgaaatgataatgaacaagtaaatatcttaagactaagaatgaggaataaggtatgatatcaaaataaagtatatagagggcctag 11098264  T
Q  987 aata 990  Q
    ||||    
T  11098265 aata 11098268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 692 - 771
Target Start/End: Complemental strand, 11556472 - 11556393
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 771  Q
    ||||||||| ||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11556472 ggaaagttgctgaagtcgaaattaatgatatggtgagataataactttaaattagaatgaagttaagattaggggaatgg 11556393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 694 - 771
Target Start/End: Original strand, 18220368 - 18220445
Alignment:
Q  694 aaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 771  Q
    ||||||| ||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  18220368 aaagttgttgaagtcgaaattaatgataaggtgagataataactttatattagaatgaagttaagattaggggaatgg 18220445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 18554495 - 18554630
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||||||||||||||| |||||| ||||||||| |   ||||||| | || |||||||||||| | |  |||||| ||||||  || ||||| ||||| |    
T  18554495 tgtagaatataagtttcaaataactgggggaggggatgagtaaaataatagtgaatagaggaggagaaaattataacaagtgattgacccaattataaat 18554594  T
Q  118 agaaacattaggagttagaagtgtcacttttgttga 153  Q
    ||||||||||||||||||||| |||||| |||||||    
T  18554595 agaaacattaggagttagaagggtcactcttgttga 18554630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 16714194 - 16714057
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||| || ||| ||||||||| ||  |||| | |||||| ||  ||| ||||||| |    
T  16714194 tgtataatataagttttaaataagtgggggagggaggaagtaaaagaatagtgagtagaggagataagaattacaacaagtgactttcccgaatataaat 16714095  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaac 155  Q
    |||||| |||| ||||||||| | || | |||||||||    
T  16714094 agaaaccttagaagttagaagagacaatattgttgaac 16714057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 858 - 915
Target Start/End: Original strand, 30279028 - 30279085
Alignment:
Q  858 acgatggtgcggtaagacctagttgtatagagggaaggcgttataagaattgttaacg 915  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  30279028 acgatggtgcggtaagacctagttgtatagaggggaggcgttataagaaatgttaacg 30279085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 692 - 889
Target Start/End: Original strand, 15890014 - 15890215
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||  ||| |||||||||| |||||   |||||||||||||||||||||| || |||||||||||||   ||| ||||||| ||||||||||||     
T  15890014 ggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggaaaatagtcgatg-tatagatgacgac 15890112  T
Q  792 gaacgtgagaggaa-gtactacga-tataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtata 886  Q
    ||| ||||||  || ||| || || |||||||| ||||| |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||| |||    
T  15890113 gaatgtgagaacaaggtaataagattataaagtcgttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttgaata 15890212  T
Q  887 gag 889  Q
    |||    
T  15890213 gag 15890215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 11097661 - 11097806
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| |  |||||||||||||||||| ||| |||||| ||     || |||||||||||| ||  ||||||||| || | ||||||    
T  11097661 aagatgaatgttagatagtaccgtataaggtgtaaaaatgaatagagaatatagaag--tctaatttagatgattgtacacgatgaaagggtcgttaaga 11097758  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  11097759 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 11097806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 710 - 889
Target Start/End: Complemental strand, 12229420 - 12229238
Alignment:
Q  710 aaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gta 808  Q
    |||||| |||||| ||||||||||||||| ||||||| || |||||||||||||  |||| ||||||| ||||||||||||  || ||||||  || | |    
T  12229420 aaagtactgataaagtgagataataacttcaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacaaatgtgagaacaaggaa 12229322  T
Q  809 ctacgatataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 889  Q
     || ||| |||||| ||||| |||| ||  |||||||| ||||| | |||||||||||||| || |  ||||||||||||||||    
T  12229321 ataagatttaaagtcgttttaaatgagaagaataattacgaaagcgttaatgacgatggtgtggaagaacctagttgtatagag 12229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 707 - 889
Target Start/End: Original strand, 15872437 - 15872623
Alignment:
Q  707 tcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa- 805  Q
    ||||||||| |||||   |||||||||||||||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| ||||||  ||     
T  15872437 tcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgagaacaag 15872535  T
Q  806 gtactacga-tataaagttgt-tttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 889  Q
    ||| || || |||||||| || || |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||| ||||||    
T  15872536 gtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttggatagag 15872623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 674 - 757
Target Start/End: Original strand, 16284586 - 16284670
Alignment:
Q  674 tataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaa 757  Q
    |||||||||||||||||  ||||||||| ||| ||  ||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  16284586 tataatgaagttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaatagaatgaagttaa 16284670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 34634670 - 34634761
Alignment:
Q  274 cttattctatcacgggggttgtttaatttttaagatgatgttgttgttatgttgtaaactttgatgagaaaatgatcatgaacgaaggtaat 365  Q
    |||||||||| |||| |||||||||||| ||||| ||||||||| ||| ||||||||||| |||||  |||||||| ||||| ||| |||||    
T  34634670 cttattctatgacggaggttgtttaattcttaagttgatgttgtcgttgtgttgtaaactgtgatggaaaaatgatgatgaatgaatgtaat 34634761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 13268358 - 13268227
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||||||||||||||| ||||||||||| |||| | | ||||||||| || ||||  |||||||| |  |||||| ||||||  || ||||  ||||| |    
T  13268358 tgtagaatataagtttcaaataagtgggagaggggaggagtaaaagaatagtgaacggaggagaagaaaattataacaagtgattgacccacttataaat 13268259  T
Q  118 agaaacattaggagttagaagtgtcacttttg 149  Q
    |||||||||| || ||||||| || |||||||    
T  13268258 agaaacattatgaattagaagggttacttttg 13268227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 695 - 772
Target Start/End: Original strand, 18556495 - 18556572
Alignment:
Q  695 aagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 772  Q
    ||||| |||| ||| ||||||||||||| ||| ||||||||||||||||||||| || ||| |||||||  |||||||    
T  18556495 aagtttatgaagtcgaaagtaatgataaagtgcgataataactttaaattagaacgaggttcagattaggagaatggt 18556572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 383 - 530
Target Start/End: Complemental strand, 11556776 - 11556631
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||| |||||| | |    || ||| |||||||| ||  ||||||| | || | ||||||    
T  11556776 aagatgaatgttagatagtaatgtataaggtgtaaaaatgaatagagaatatatt--agtctaatatagatgattgtaaacgatgagagggtcgttaaga 11556679  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
      |||||||| |||||||| || ||||| ||||||||||  |||||||    
T  11556678 tgaaatgtaagggaagataaggagttgtatattaagtaataaaagata 11556631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 946 - 1057
Target Start/End: Complemental strand, 17337992 - 17337880
Alignment:
Q  946 aatatggtatgctattagaa-taaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaat 1044  Q
    |||| |||||| |||||||| ||||||||  ||||||||||||||||| | || || | |  |||    |||||||| |||||||||||| |||||| ||    
T  17337992 aatagggtatgatattagaaataaagtatacagagagcctagaatagatgcgaggacataatatgtctgtaagatgagtaataaaataaaatagagggat 17337893  T
Q  1045 gttgacgtagaaa 1057  Q
    |||||||||||||    
T  17337892 gttgacgtagaaa 17337880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 12231146 - 12231097
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagta 67  Q
    |||||||  |||| ||| ||||||||||||||||| ||||||||||||||    
T  12231146 tgtagaaagtaagattttaataagtgggggaggagagaagtaaaagagta 12231097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 16282738 - 16282787
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagta 67  Q
    |||||||  |||||||| ||||||||||||||| | ||||||||||||||    
T  16282738 tgtagaaagtaagtttttaataagtgggggaggggagaagtaaaagagta 16282787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 17339421 - 17339392
Alignment:
Q  21 agaatataagttttaaataagtgggggagg 50  Q
    ||||||||||||||||||||||||||||||    
T  17339421 agaatataagttttaaataagtgggggagg 17339392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 2e-61; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 958 - 1166
Target Start/End: Complemental strand, 41744538 - 41744331
Alignment:
Q  958 tattagaataaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaaa 1057  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||  ||||||| |||||||    
T  41744538 tattagaataaagtatcttgagagtctagagtagacgagaagatagagtatgatcgtaagatgaataataaaataaagtacagagatgttgatgtagaaa 41744439  T
Q  1058 caggtcttgtttatgaattggattaatgaagagaatagggtagtgatataaatgtcttgatgtggataaatgttaaagaattttatgactataaacaaga 1157  Q
    |  ||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| || | |||| | |||||||||||||| ||||||||||    
T  41744438 cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggt-aatgatgaagaattttatgaccataaacaaga 41744340  T
Q  1158 gtaatgagg 1166  Q
    |||||||||    
T  41744339 gtaatgagg 41744331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 48379242 - 48379103
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || ||||| ||||| |    
T  48379242 tgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaagtataaat 48379143  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  48379142 agaaacattagaagttagaagagtcacttttgttgaacgt 48379103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 692 - 777
Target Start/End: Complemental strand, 20026528 - 20026443
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 777  Q
    ||||||||| ||| ||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  20026528 ggaaagttgttgaagtcgaaattaatgatagggtgagataataactctaaattagaatgaagttaagattaggggaatggacgatg 20026443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 663 - 889
Target Start/End: Original strand, 13477203 - 13477432
Alignment:
Q  663 aaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagatt 761  Q
    ||||| |||| ||||||| ||| |||||  ||||||||| ||| ||| ||| |||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  13477203 aaaccttaaattataatgtagtcttagtgaggaaagttgctgaagtccaaattaatgataaggtgagataataagtttaatttagaacgaagttaagatt 13477302  T
Q  762 agaggaatggtcgatgttatagatgacgatgaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatga 858  Q
    || ||||||| | | |  || |||||| |  ||| |||| |  ||||| || ||||||||||  ||||| || ||  ||||| |||||| ||| ||||||    
T  13477303 aggggaatggacaacg-catggatgactacaaacatgagaacaaagtaataagatataaagtcattttattgagaagaataagtatgaaggagttaatga 13477401  T
Q  859 cgatggtgcggtaagacctagttgtatagag 889  Q
    |||||||| |||| |||||||||||| ||||    
T  13477402 cgatggtgaggtaggacctagttgtaaagag 13477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 383 - 530
Target Start/End: Complemental strand, 11655955 - 11655810
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||  |||||| || |   || |||||||||||| ||  ||||||| | || |||||| |    
T  11655955 aagatgaatgttagatagtaatgtataaggtgtaaaaatgaattgagaatatagagg--tctaatttagatgattgtaaacgatgagagggtcattaaaa 11655858  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  11655857 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 11655810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 674 - 801
Target Start/End: Original strand, 37945374 - 37945501
Alignment:
Q  674 tataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 772  Q
    ||||||||||| |||||  ||||||||| ||| ||  |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||  ||||| |    
T  37945374 tataatgaagtcttagtgaggaaagttgctgaagttgaaagtaatgaaaaggtgagataataactttaatttagaatcaagttaagattaggagaatgat 37945473  T
Q  773 cgatgttatagatgacgatgaacgtgaga 801  Q
     |  | |||||||||||||||| ||||||    
T  37945474 tggcg-tatagatgacgatgaatgtgaga 37945501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 13773611 - 13773750
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||| ||||||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || ||||| ||||| |    
T  13773611 tgtagaatataagttttaaataaatgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaagtataaat 13773710  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
     |||||||||| |||||||||  |||||||||||||||||    
T  13773711 ggaaacattagaagttagaagaatcacttttgttgaacgt 13773750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1225 - 1339
Target Start/End: Complemental strand, 41744291 - 41744176
Alignment:
Q  1225 aaaagacgatgtctattttaggataaacaatgagatatgatgatgtttgttttgtaatgatgatgagggtgatgttgtcta-attatattgataatgata 1323  Q
    ||||||||| |||||||||||| |||||||||||| |||||| ||| | || |||||||||||||||  ||||| | ||||  |||||||||| |||| |    
T  41744291 aaaagacgacgtctattttagggtaaacaatgagaaatgatggtgtctattgtgtaatgatgatgagaatgatgatctctactttatattgatgatgaga 41744192  T
Q  1324 atgatgatgtccatct 1339  Q
    ||||||||||| ||||    
T  41744191 atgatgatgtctatct 41744176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 715 - 763
Target Start/End: Original strand, 4531365 - 4531413
Alignment:
Q  715 aatgataaggtgagataataactttaaattagaatgaagttaagattag 763  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4531365 aatgataaggtgagataataactttaaattagaacgaagttaagattag 4531413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 15864966 - 15865018
Alignment:
Q  105 cccaaatataagtagaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  15864966 cccaagtataaatagaaacattaggagttagaagagtcacttttgttgaacgt 15865018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 22614372 - 22614517
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| ||||||||||||||| ||||| ||| |||||| |  | | || |||||||||||| ||  ||||| | | || | ||||||    
T  22614372 aagatgaatgttagatagtaatgtataaggtgtataaatgaatagagaatata--gaggtctaatttagatgattgtaaacgattagagggtcgttaaga 22614469  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| ||||||||||  |||||||    
T  22614470 cgaaatgtaagggaagataaggagttgtatattaagtaattaaagata 22614517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 946 - 1057
Target Start/End: Original strand, 37945650 - 37945762
Alignment:
Q  946 aatatggtatgctattagaa-taaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaat 1044  Q
    |||| |||||| |||| ||| |||||||  |||||||||||||||||| | ||  | |||| |||  | |||||||||||||||| |||| |||||||||    
T  37945650 aatagggtatgatatttgaaataaagtagatagagagcctagaatagatgcgagaacagagtatgtccgtaagatgaataataaattaaaatagaggaat 37945749  T
Q  1045 gttgacgtagaaa 1057  Q
    |||||||||||||    
T  37945750 gttgacgtagaaa 37945762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 15866879 - 15866986
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||| ||| | ||||||||||||||| || | || |||||  ||||||||||| ||||||||||  ||||| || ||||||||    
T  15866879 aggttagataataactttaaaattaaattgaagttaagattagggggacggacgatgc-atagatgacgacgaacgtgagaacaagtaataagatataaa 15866977  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  15866978 gtcgtttta 15866986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 650 - 733
Target Start/End: Original strand, 2889131 - 2889215
Alignment:
Q  650 taacgagaaattaaaaccctaaaatataatgaagttttagt-tggaaagttgatgacgtcaaaagtaatgataaggtgagataat 733  Q
    |||||||| | ||||||||||||||  ||||||||||||||  | ||||||| ||| ||||||| ||||||||||  ||||||||    
T  2889131 taacgagagaataaaaccctaaaatgaaatgaagttttagtgagaaaagttgttgatgtcaaaaataatgataagtcgagataat 2889215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 2243337 - 2243275
Alignment:
Q  20 tagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaa 82  Q
    ||||||||||||| ||||||||||||| ||| | | ||||||||| || ||| ||||||||||    
T  2243337 tagaatataagttctaaataagtggggaaggggaggagtaaaagaatagtgagtagaggagaa 2243275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1274 - 1324
Target Start/End: Original strand, 16068913 - 16068962
Alignment:
Q  1274 ttttgtaatgatgatgagggtgatgttgtctaattatattgataatgataa 1324  Q
    |||| ||||||||||||||||||||||  |||||||||||||| |||||||    
T  16068913 ttttataatgatgatgagggtgatgtt-actaattatattgatgatgataa 16068962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 16068059 - 16068175
Alignment:
Q  243 taagtgggagaatcctttcactttacggtaacttattctatcacggg--ggttgt-ttaatttttaagatgatgttgttgttatgttgtaaactttgatg 339  Q
    |||| ||||||||| || || |||| |||| |||| ||||| |||||  |||||| |||| |||||| ||| ||||  ||||||| ||| || |||||||    
T  16068059 taagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatg 16068158  T
Q  340 agaaaatgatcatgaac 356  Q
    |||||||||| ||||||    
T  16068159 agaaaatgatgatgaac 16068175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 3e-42; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 767 - 963
Target Start/End: Complemental strand, 29637496 - 29637297
Alignment:
Q  767 aatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgttttaatgggaaa--taattatgaaagaggtaatgacgatgg 864  Q
    |||||| ||||||| | |||||||||||||||||| |||||| ||  ||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  29637496 aatggttgatgttacaaatgacgatgaacgtgagatgaagtaatataatataaagttgttttaatgagaaaaataattatgaaagaggtaatgacgatgg 29637397  T
Q  865 tgcggtaagacctagttgtatagagggaaggcgttataagaattgttaacgaggaagtaagcatcttaaattat-aatgaagaatatggtatgctattag 963  Q
    || ||||| || | |||||||||| ||||| |||| |||||| |||||| |  ||||||| ||||| ||||||| ||||||||||| |||||| ||||||    
T  29637396 tgaggtaaaacatggttgtatagatggaagacgttctaagaaatgttaatggagaagtaaacatctaaaattatgaatgaagaatagggtatgatattag 29637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 692 - 1056
Target Start/End: Complemental strand, 24786701 - 24786334
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||| ||| ||| ||| ||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||  ||| ||||| |     
T  24786701 ggaaacttgttgaagtcgaaattaatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatg-cataaatgactac 24786603  T
Q  792 gaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 888  Q
    |||| |||| |  ||||| || || |||||||||||||| || ||  ||||| |||||| ||| |||||||||||||| |||| |||||||||||| |||    
T  24786602 gaacatgagaacaaagtaataagagataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaaga 24786503  T
Q  889 gggaaggcgttataagaattgttaacgaggaagtaagcatctta--aattataatgaagaatatggtatgctattagaataaagtatttagagagcctag 986  Q
    | | || ||||||| | | || ||| ||  ||||||  ||| ||  | | | ||||| |||||  ||||| ||| |||||||||||| ||||  ||||||    
T  24786502 gaggagacgttatatgtaatggtaatgaacaagtaa-tatcataagactaagaatgaggaatagagtatgatatcagaataaagtatatagattgcctag 24786404  T
Q  987 aatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaa 1056  Q
    |||||| ||||  |||||||| |    | ||||||||||||||||||| || ||| ||||||||||||||    
T  24786403 aatagatgagagaatagagcacgtctgtgagatgaataataaaataaaataaagggatgttgacgtagaa 24786334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 18784140 - 18784259
Alignment:
Q  243 taagtgggagaatcctttcactttacggtaacttattctatcacgggggttgtttaatttttaagatgatgttgttgttatgttgtaaactttgatgaga 342  Q
    |||| |||||||||  ||||| ||| ||||  ||||||||| ||||||| ||||||||| || || ||||||||||||||||||||||||| ||||||||    
T  18784140 taagggggagaatctcttcacgttagggtattttattctatgacgggggatgtttaattatttagttgatgttgttgttatgttgtaaactgtgatgaga 18784239  T
Q  343 aaatgatcatgaacgaaggt 362  Q
    || |||| ||||||||||||    
T  18784240 aactgatgatgaacgaaggt 18784259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1220 - 1326
Target Start/End: Original strand, 18785110 - 18785217
Alignment:
Q  1220 tgagaaaaagacgatgtctattttaggataa-acaatgagatatgatgatgtttgttttgtaatgatgatgagggtgatgttgtctaattatattgataa 1318  Q
    |||||| |||| | ||||||||||| ||| | ||||||| | |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |    
T  18785110 tgagaagaagatggtgtctattttacgattagacaatgaaaaatgatgatgtttgttttgtaatgatggtgaggatgatgttttctaattatattgatga 18785209  T
Q  1319 tgataatg 1326  Q
    ||||||||    
T  18785210 tgataatg 18785217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 1049 - 1177
Target Start/End: Original strand, 18784962 - 18785089
Alignment:
Q  1049 acgtagaaacaggtcttgtttatgaattggattaatgaagagaatagggtagtgatataaatgtcttgatgtggataaatgttaaagaattttatgacta 1148  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||||||| || |||| ||||||||| ||  ||||  ||||||||||  ||||||    
T  18784962 acgtagaaacaagtcgtgtttatgaaatggattaatcaagaggatagggtagtaatctaaacgtcttgatg-ggggaaataataaagaatttattgacta 18785060  T
Q  1149 taaacaagagtaatgaggcgtaatgtcat 1177  Q
    |||||||||||||| ||  ||||||||||    
T  18785061 taaacaagagtaataagaagtaatgtcat 18785089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 383 - 546
Target Start/End: Complemental strand, 29637821 - 29637658
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||||||||||| |||||| |||||||||||| || | |||| |||| ||||| | ||||||||||||||| ||||| ||||| |      ||||||    
T  29637821 aagatgattgttagacaggaatttataaggtgtaataaagaataacgaatcgagtgtggtcgaatttagatgattgtggatgatgagagaattgttaaga 29637722  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagatattaaggataataatag 546  Q
    | ||||||||| ||||||| || |||||||||||||||| ||| | | ||| ||||||| ||||    
T  29637721 cgaaatgtaaacgaagatatggagttgtgtattaagtaatgaatggtgttatggataatgatag 29637658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 714 - 771
Target Start/End: Original strand, 44586051 - 44586108
Alignment:
Q  714 taatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 771  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44586051 taatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaatgg 44586108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 44585775 - 44585920
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| || |||||||||||||||||| ||| |||||| |||    || ||| |||||||| ||  ||||||| | || ||||||||    
T  44585775 aagatgaatgttagatagtaacgtataaggtgtaaaaatgaatagagaatatagtag--tctaatgtagatgattgtaaacgatgagagggtcattaaga 44585872  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
      |||||||| |||||||| || ||||| |||||||||||||||||||    
T  44585873 tgaaatgtaagggaagataaggagttgtatattaagtaacgaaagata 44585920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 693 - 771
Target Start/End: Original strand, 23656030 - 23656108
Alignment:
Q  693 gaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 771  Q
    |||||||| ||| ||| | | |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  23656030 gaaagttgttgaagtcgagattaataataaggtgagataattactttaaattagaatgaagttaagattaggggaatgg 23656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 18985043 - 18985187
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggag---gga--agtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaata 112  Q
    |||||||||||||||| |||||||||||||||| |   |||  ||||||||| || |||| | |||| || |  |||||| ||||||  || ||||| ||    
T  18985043 tgtagaatataagtttcaaataagtgggggaggggaggggaggagtaaaagaatagtgaaaaaaggataagaaaattataacaagtgattgacccaatta 18985142  T
Q  113 taagtagaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||| |||||||||||||| ||||||| ||| ||||||||||||||    
T  18985143 taaatagaaacattaggatttagaagggtcgcttttgttgaacgt 18985187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 714 - 778
Target Start/End: Original strand, 32251782 - 32251846
Alignment:
Q  714 taatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgt 778  Q
    ||||||||||||| ||| |||| |||||||||||||| || |||||||||| ||||| |||||||    
T  32251782 taatgataaggtgggatgataattttaaattagaatgtagataagattagaagaatgatcgatgt 32251846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 644 - 730
Target Start/End: Complemental strand, 29637590 - 29637503
Alignment:
Q  644 gaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttg-gaaagttgatgacgtcaaaagtaatgataaggtgagat 730  Q
    ||||||||| |||| |||| ||||||||| | ||||||| ||||||| | |||||||  ||||||  ||||||||||||| |||||||    
T  29637590 gaccggtaatgagatattagaaccctaaagtgtaatgaaattttagtggagaaagtttctgacgttgaaagtaatgataatgtgagat 29637503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 20179624 - 20179566
Alignment:
Q  389 attgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaat 447  Q
    |||||||| |||||||||| |||||  ||||||| ||||||||||||||| | ||||||    
T  20179624 attgttaggtaggaatgtaaaaggttaaaaaatgaataaagaatagagtgtggtcgaat 20179566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 1e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 248 - 365
Target Start/End: Original strand, 24143879 - 24143996
Alignment:
Q  248 gggagaatcctttcactttacggtaacttattctatcacgggggttgtttaatttttaagatgatgttgttgttatgttgtaaactttgatgagaaaatg 347  Q
    |||||||||||||||||||| |||| ||||||  || ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  24143879 gggagaatcctttcactttagggtaccttatttaataacgggggttgtttaattcttaagatgatgttgttggtatgatgtaaactttgatgagaaaatg 24143978  T
Q  348 atcatgaacgaaggtaat 365  Q
    || ||||||||| |||||    
T  24143979 atgatgaacgaacgtaat 24143996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 643 - 773
Target Start/End: Original strand, 23960433 - 23960564
Alignment:
Q  643 cgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaa 741  Q
    ||||||||| ||||||| ||| ||| |||  ||||||| |||||| |   ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  23960433 cgaccggtatcgagaaaataagaccttaagttataatggagttttggcgaggaaagttgctgacgtcaaaagtaatggtaaggtgagataataactttaa 23960532  T
Q  742 attagaatgaagttaagattagaggaatggtc 773  Q
    ||||||||||||||||| || |||| ||||||    
T  23960533 attagaatgaagttaaggttggaggcatggtc 23960564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 710 - 770
Target Start/End: Complemental strand, 13937453 - 13937393
Alignment:
Q  710 aaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatg 770  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13937453 aaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaagaatg 13937393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 24831294 - 24831437
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||| || |||||    | || |||||||||||| ||  ||||||  | || | ||||||    
T  24831294 aagatgaatgttagatagtaatgtataaggtgtaaaaatgaatagagtataga----ggtctaatttagatgattgtaaacgatgggagggtcgttaaga 24831389  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  24831390 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 24831437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 693 - 763
Target Start/End: Original strand, 24831597 - 24831667
Alignment:
Q  693 gaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattag 763  Q
    |||||||| ||| ||||||| |||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  24831597 gaaagttgttgaagtcaaaattaatgataaggtgagatagtaactttaaattagaacggagttaagattag 24831667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 692 - 801
Target Start/End: Complemental strand, 24759315 - 24759207
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||| ||| ||| ||||||| |||||| |||||||||||||||||| |||||||| |||||  ||||   ||||||||||| |||||||||| |     
T  24759315 ggaaagttgctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatg-tatagatgactac 24759217  T
Q  792 gaacgtgaga 801  Q
    ||| ||||||    
T  24759216 gaatgtgaga 24759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 24829689 - 24829750
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagagga 79  Q
    ||||||||||||||||||||||||||||||||| |   ||||||||| || ||| |||||||    
T  24829689 tgtagaatataagttttaaataagtgggggaggggaagagtaaaagaatagtgagtagagga 24829750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 4e-35; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 385 - 545
Target Start/End: Original strand, 19907889 - 19908049
Alignment:
Q  385 gatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaagaca 484  Q
    |||||||||||||   |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||| |||    |||||||     
T  19907889 gatgattgttagacttgaatgtataaggtgtaaaaatgtataaagaatagagtgtgatcaaatttagatgattgtggacgatgagatgattgttaagacg 19907988  T
Q  485 aaatgtaaaggaagatagggggttgtgtattaagtaacgaaagatattaaggataataata 545  Q
    ||| ||||| ||| |||||| |||| ||||||||||| ||| ||| |||||||||||||||    
T  19907989 aaaagtaaacgaatatagggagttgcgtattaagtaatgaatgatgttaaggataataata 19908049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 648 - 793
Target Start/End: Original strand, 19908148 - 19908294
Alignment:
Q  648 ggtaacgagaaattaaaaccctaaaatataatgaagttttagttgg-aaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattag 746  Q
    ||||| |||| |||| ||||||||||| ||||||||||||| | || ||||||| |||| || ||||||| |||||||||||||||||||||||||||||    
T  19908148 ggtaatgagagattagaaccctaaaatgtaatgaagttttattggggaaagttgctgacatcgaaagtaacgataaggtgagataataactttaaattag 19908247  T
Q  747 aatgaagttaagattagaggaatggtcgatgttatagatgacgatga 793  Q
    ||  |||||||||||   | |||||||||| ||||| ||||| ||||    
T  19908248 aaataagttaagattttggaaatggtcgatattataaatgacaatga 19908294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 14057453 - 14057592
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || |||||  |||| |    
T  14057453 tgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaatttataacatgtgattgacccaagcataaat 14057552  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  14057553 agaaacattaggagttagaagagtcacttttgttgaacgt 14057592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 17958934 - 17959073
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||| |||||||||||||||||||||||||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || ||||| ||||| |    
T  17958934 tgtataatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaagtataaat 17959033  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  17959034 agaaacattaggagttagaagagtcacttttgctgaacgt 17959073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 674 - 889
Target Start/End: Original strand, 16359134 - 16359354
Alignment:
Q  674 tataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 772  Q
    ||||||||||| |||||  ||||||||  ||| |||||||||| |||||   |||||||||||||||||||||| || |||||||||||||  |||| ||    
T  16359134 tataatgaagtcttagtgaggaaagtttctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagt 16359233  T
Q  773 cgatgttatagatgacgatgaacgtgagaggaa-gtactacga-tataaagttgt-tttaatggga--aataattatgaaagaggtaatgacgatggtgc 867  Q
    ||||| |||||||||||| ||| ||||||  || ||| || || |||||||| || || |||| ||  |||||||| ||||||| ||||||||||||||     
T  16359234 cgatg-tatagatgacgacgaatgtgagaacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtgg 16359332  T
Q  868 ggtaagacctagttgtatagag 889  Q
    || |  ||||||||| ||||||    
T  16359333 ggaagaacctagttggatagag 16359354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 692 - 888
Target Start/End: Complemental strand, 21975746 - 21975547
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||  ||| ||||| |||| |||||| |||||||||||| |||||||||| || |||||||||||||  |||| ||||||| ||||||||||||     
T  21975746 ggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgac 21975648  T
Q  792 gaacgtgagaggaa-gtactacgatataaagttgttttaatggga---aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatag 887  Q
    ||| ||||||  || ||| || ||||||||||  ||||||    |   |||||||| ||||||| |||||||||||||| || |  |||||| |||||||    
T  21975647 gaatgtgagaacaaggtaataagatataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctaggtgtatag 21975548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 692 - 888
Target Start/End: Complemental strand, 21998177 - 21997978
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||  ||| ||||| |||| |||||| |||||||||||| |||||||||| || |||||||||||||  |||| ||||||| ||||||||||||     
T  21998177 ggaaagtttctgaagtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgac 21998079  T
Q  792 gaacgtgagaggaa-gtactacgatataaagttgttttaatggga---aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatag 887  Q
    ||| ||||||  || ||| || ||||||||||  ||||||    |   |||||||| ||||||| |||||||||||||| || |  |||||| |||||||    
T  21998078 gaatgtgagaacaaggtaataagatataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctaggtgtatag 21997979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 777
Target Start/End: Original strand, 14481197 - 14481282
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 777  Q
    ||||||||| ||| ||||||| |||||||||||||||| | |||||||||||||||| | |||||||||||| | ||||| |||||    
T  14481197 ggaaagttgttgaagtcaaaattaatgataaggtgagacagtaactttaaattagaacggagttaagattagggaaatggacgatg 14481282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 777
Target Start/End: Complemental strand, 17791429 - 17791344
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 777  Q
    ||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||| |||||    
T  17791429 ggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatg 17791344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 777
Target Start/End: Complemental strand, 19099869 - 19099784
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 777  Q
    ||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||| |||||    
T  19099869 ggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatg 19099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 982 - 1057
Target Start/End: Original strand, 5943809 - 5943884
Alignment:
Q  982 cctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaaa 1057  Q
    ||||||||||| ||||| |||||| |||  ||||||||||||||||||||||| |||||| |||||||||| ||||    
T  5943809 cctagaatagatgagaaaatagagtatgtccataagatgaataataaaataaaatagagggatgttgacgtcgaaa 5943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 16932737 - 16932852
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| |   ||||||||  || |||||| |||||||||   ||||| || |||  || ||||| ||||| |    
T  16932737 tgtagaatataagttttaaataagtgggggaggggaagagtaaaagtatagtgaataaaggagaaaaaagttataacatgtgattgacccaagtataaat 16932836  T
Q  118 agaaacattaggagtt 133  Q
    ||||||||||||||||    
T  16932837 agaaacattaggagtt 16932852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 706 - 801
Target Start/End: Complemental strand, 22160327 - 22160233
Alignment:
Q  706 gtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgaga 801  Q
    ||||| |||| |||||| |||||||||||| |||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| ||||||    
T  22160327 gtcaagagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgaga 22160233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 706 - 889
Target Start/End: Complemental strand, 19185393 - 19185209
Alignment:
Q  706 gtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa 805  Q
    |||||||||| ||||||  |||||||||||||| ||||||| || |||||||||||||  |||| ||||||| ||||||||||   ||| ||||||  ||    
T  19185393 gtcaaaagtactgataaaatgagataataacttcaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacagcgaatgtgagaacaa 19185295  T
Q  806 -gtactacgatataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaag-acctagttgtatagag 889  Q
     ||| || |||||||||||||||| |||| ||  |||||||| |||  || |||||| ||||||| |||||| ||||||||||||||||    
T  19185294 ggtaataagatataaagttgttttaaatgagaagaataattacgaa--agttaatgatgatggtg-ggtaagaacctagttgtatagag 19185209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 692 - 801
Target Start/End: Original strand, 13926428 - 13926536
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||| ||| ||||||||||| |||||| || | ||||||||||||| ||||||||||||||| |||   ||| | |||||  |||||||||||||    
T  13926428 ggaaagttgctgaagtcaaaagtaacgataagatggggtaataactttaaaatagaatgaagttaaggttaagagaaggatcgat-atatagatgacgat 13926526  T
Q  792 gaacgtgaga 801  Q
    ||| ||||||    
T  13926527 gaatgtgaga 13926536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 692 - 801
Target Start/End: Complemental strand, 22924409 - 22924301
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||| ||| ||| |||||||  ||||| |||||||||||||||||| ||||||||||||||| |||   ||||| |||||| |||| |||||||     
T  22924409 ggaaagttgttgaagtcgaaagtaactataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatg-tatatatgacgac 22924311  T
Q  792 gaacgtgaga 801  Q
    ||| ||||||    
T  22924310 gaatgtgaga 22924301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 14479278 - 14479417
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||||||||||||||||||||||| |||||||| |   ||||||||| || ||| |||||| ||| |  ||  ||||||||||  ||||| ||||||| |    
T  14479278 tgtagaatataagttttaaataagcgggggaggggaagagtaaaagaatagtgagtagaggggaagagaatcttagcaagtggtcggccctaatataaat 14479377  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    |||||  ||| |||||||||| |||| | ||| |||||||    
T  14479378 agaaaggttaagagttagaagagtcagtattgctgaacgt 14479417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 713 - 866
Target Start/End: Original strand, 5943553 - 5943708
Alignment:
Q  713 gtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag-aggaagtacta 811  Q
    |||||||||||||| |||||||| || |||||||||  || ||||||||||  |||||||| ||| |||||||||||| ||| ||||| | ||  || ||    
T  5943553 gtaatgataaggtgtgataataatttcaaattagaacaaaattaagattaggagaatggtcaatg-tatagatgacgaggaatgtgagaatgagataata 5943651  T
Q  812 cgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtg 866  Q
     |||||||||| | ||||||| ||  ||||| | |||||||| ||||||| ||||||    
T  5943652 agatataaagtcgctttaatgagaagaataagtttgaaagagttaatgacaatggtg 5943708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 692 - 793
Target Start/End: Original strand, 13928826 - 13928926
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||| ||| ||| ||||||| |||||| || | ||||||||||||| ||||||||||||||| ||||  ||||| |||||  ||||||||| |||    
T  13928826 ggaaagttgctgaagtcgaaagtaaagataagatggggtaataactttaaaatagaatgaagttaaggttaggagaatgatcgat-atatagatgatgat 13928924  T
Q  792 ga 793  Q
    ||    
T  13928925 ga 13928926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 383 - 530
Target Start/End: Complemental strand, 17791733 - 17791588
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| |||||||||||||||||| || ||| |||||| |    | || ||||||||||||  |  ||||||| | || | |||| |    
T  17791733 aagatgaatgttagatagtaatgtataaggtgtaaaattgaatagagaatata--aaggtctaatttagatgattttaaacgatgagagggtctttaata 17791636  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  17791635 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 17791588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 383 - 530
Target Start/End: Complemental strand, 19100173 - 19100028
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| |||||||||||||||||| || ||| |||||| |    | || ||||||||||||  |  ||||||| | || | |||| |    
T  19100173 aagatgaatgttagatagtaatgtataaggtgtaaaattgaatagagaatata--aaggtctaatttagatgattttaaacgatgagagggtctttaata 19100076  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  19100075 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 19100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 727 - 829
Target Start/End: Complemental strand, 16642805 - 16642704
Alignment:
Q  727 agataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgt 825  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||||||  ||||| || |||||||||| ||    
T  16642805 agataataacattaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgagaacaagtaataagatataaagtcgt 16642708  T
Q  826 ttta 829  Q
    ||||    
T  16642707 ttta 16642704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 16928878 - 16928819
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagag 77  Q
    |||||||||||||||||| |||||||||||||| | | ||||||||| |||||| |||||    
T  16928878 tgtagaatataagttttatataagtgggggaggggaggagtaaaagaataatgagtagag 16928819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 14054653 - 14054760
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| || | || |||||  |||| |||||| ||||||||||  ||||| || |||||||     
T  14054653 aggttagataataactttaaaattaaaatgaagttaagattagggggacggacgatg-cataggtgacgacgaacgtgagaacaagtaataagatataag 14054751  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  14054752 gtcgtttta 14054760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 14062382 - 14062489
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| || | || |||||  |||| |||||| ||||||||||  ||||| || ||||||||    
T  14062382 aggttagataataactttaaaattaaaatgaagttaagattagggggacggacgatg-cataggtgacgacgaacgtgagaacaagtaataagatataaa 14062480  T
Q  821 gttgtttta 829  Q
     | ||||||    
T  14062481 ttcgtttta 14062489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 939 - 1005
Target Start/End: Original strand, 27870331 - 27870397
Alignment:
Q  939 aatgaagaatatggtatgctattagaataaagtatttagagagcctagaatagacgagaagatagag 1005  Q
    ||||| |||||||||||| ||| | |||||||||| || ||| ||||||||||| ||||| ||||||    
T  27870331 aatgaggaatatggtatgatatcataataaagtatatatagatcctagaatagatgagaaaatagag 27870397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 21028930 - 21028850
Alignment:
Q  216 aaaagcagtgatttcagagattcgagataagtgggagaatcctttcactttacggtaacttattctatcacgggggttgttt 297  Q
    |||||| |||| ||| |||||||||| |||| |||||| ||||||||||||| |||| | ||||||||   |||||||||||    
T  21028930 aaaagctgtgacttcggagattcgaggtaagggggagattcctttcactttagggtatc-tattctatgttgggggttgttt 21028850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 692 - 889
Target Start/End: Original strand, 8403366 - 8403570
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||  ||| |||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||  |||| ||||||| ||||||||||||     
T  8403366 ggaaagtttctgaagtcaaaagtactgataaagtgagataataactttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgac 8403464  T
Q  792 gaacgtgagaggaag-----tactacgatataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgt 883  Q
    ||| ||||||  |||     || || |||||||||| ||||| |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||||    
T  8403465 gaatgtgagaacaagataattaataagatataaagtagttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttgt 8403564  T
Q  884 atagag 889  Q
    ||||||    
T  8403565 atagag 8403570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 19544919 - 19545058
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||||||||||||||| |||||||||||||||| |   ||||||| | || |||||||||||| | |  |||||| ||||||  || ||||| ||||| |    
T  19544919 tgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaatagaggaggagaaaattataacaagtgattgacccaattataaat 19545018  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  19545019 agaaacattaggagttagaagggtcactcttgttgaacgt 19545058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 716 - 1057
Target Start/End: Complemental strand, 9191560 - 9191214
Alignment:
Q  716 atgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag-aggaagtactacga 814  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||  |||||||||||| |||| ||| ||| ||| ||||| | || ||| || ||    
T  9191560 atgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatg-tatacatggcgacgaaagtgagaacgaggtaataaga 9191462  T
Q  815 tataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagagggaaggcgttataagaattgtta 912  Q
    ||||||||   ||||||| ||  ||||| |||||||||| ||||||| |||||| || |  |||||||| |||| || | || |||| || | | || ||    
T  9191461 tataaagtaactttaatgagaggaataagtatgaaagagttaatgacaatggtgaggaagaacctagttatataaagaggagacgttgtatgtaatgata 9191362  T
Q  913 acgaggaagtaagcatctt--aaattataatgaagaatatggtatgctatta-gaataaagtatttagagagcctagaatagacgagaagatagagcatg 1009  Q
    |  |  ||| || ||||||  || | | ||||||||||| |||||| ||| | | ||||||| | |||||| | ||| ||||||||||  |||||  |||    
T  9191361 aaaaataagaaaacatcttgaaactaagaatgaagaatagggtatgatatcagggataaagtttatagagatcttaggatagacgagagaatagattatg 9191262  T
Q  1010 atcataagatgaataataaaataaagtagaggaatgttgacgtagaaa 1057  Q
      |||||||||||||||||||| |  |||||| |||||||||||||||    
T  9191261 tccataagatgaataataaaatcatatagagggatgttgacgtagaaa 9191214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 7681874 - 7682019
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||| ||| || || |   || |||||||||||| ||| ||||||  | || | ||||||    
T  7681874 aagatgaatgttagatagtaatgtataaggtgtaaaaatgaatagagagtatagagg--tctaatttagatgattgtgaacgatgggagggtcgttaaga 7681971  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    |||||||||| |||||||| || ||||| |||||||||| ||||||||    
T  7681972 caaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 7682019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 692 - 992
Target Start/End: Complemental strand, 14970620 - 14970316
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||| ||| ||||||| |||||||| ||||||||||||||| |||||||||   || ||||||  || ||||||| |||||  ||||||||| |     
T  14970620 ggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatg-catagatgactac 14970522  T
Q  792 gaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 888  Q
    |||| |||| |  ||||| || |||||| ||| |||||| || ||  ||||| |||||| ||| ||||||||||||||  |||  | ||||||||| |||    
T  14970521 gaacatgagaacaaagtaataagatatacagtggttttattgagaagaataagtatgaaggagttaatgacgatggtgaagtagtatctagttgtaaaga 14970422  T
Q  889 gggaaggcgttataagaattgttaacgaggaagtaagcatctta--aattataatgaagaatatggtatgctattagaataaagtatttagagagcctag 986  Q
    | |||| ||||||| | | || ||| ||  ||||||  ||||||  | | | ||| | ||||| |||||| ||| |||||||||||| ||||| ||||||    
T  14970421 gagaagacgttatatgtaatgataatgaacaagtaaatatcttaagactaagaattaggaatagggtatggtatcagaataaagtatatagagggcctag 14970322  T
Q  987 aataga 992  Q
    ||||||    
T  14970321 aataga 14970316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1228 - 1334
Target Start/End: Complemental strand, 24622462 - 24622355
Alignment:
Q  1228 agacgatgtctattttaggat-aaacaatgagatatgatgatgtttgttttgtaatgatgatgagggtgatgttgtctaattatattgataatgataatg 1326  Q
    ||||| ||||||||| | ||| ||||||||||| ||||| |||| || ||||||||||| |||||| ||||||||||||||||| | |||||||||||      
T  24622462 agacggtgtctatttcaagattaaacaatgagaaatgataatgtgtgctttgtaatgataatgaggatgatgttgtctaattatttcgataatgataaaa 24622363  T
Q  1327 atgatgtc 1334  Q
    ||||||||    
T  24622362 atgatgtc 24622355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 692 - 763
Target Start/End: Original strand, 7682176 - 7682247
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattag 763  Q
    ||||||||| ||| ||||||| |||||||||||| | ||| |||||||||||||||| | ||||||||||||    
T  7682176 ggaaagttgttgaagtcaaaattaatgataaggtaacatagtaactttaaattagaacggagttaagattag 7682247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 383 - 530
Target Start/End: Original strand, 10641007 - 10641152
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| || |||||||||||||||||| ||| |||||| |  |   || |||||||||||| ||  ||||||  | || | |||||     
T  10641007 aagatgaatgttagatagtaacgtataaggtgtaaaaatgaatagagaatata--gaattctaatttagatgattgtaaacgatgggagggtccttaagg 10641104  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  10641105 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 10641152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 713 - 759
Target Start/End: Original strand, 10906324 - 10906370
Alignment:
Q  713 gtaatgataaggtgagataataactttaaattagaatgaagttaaga 759  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||    
T  10906324 gtaatgataaggtgatatgataactttaaattagaatcaagttaaga 10906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 7680380 - 7680413
Alignment:
Q  17 atgtagaatataagttttaaataagtgggggagg 50  Q
    ||||||||||||||||||||||||||||||||||    
T  7680380 atgtagaatataagttttaaataagtgggggagg 7680413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 695 - 772
Target Start/End: Original strand, 19546919 - 19546996
Alignment:
Q  695 aagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 772  Q
    ||||| |||| ||| ||||||||||| | ||| ||||||||||||||||||||| || ||| |||||||  |||||||    
T  19546919 aagtttatgaagtcgaaagtaatgattaagtgcgataataactttaaattagaacgaggttcagattaggagaatggt 19546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 442 - 529
Target Start/End: Complemental strand, 9191825 - 9191738
Alignment:
Q  442 tcgaatttagatgatggtggacgatgaaatggacattaagacaaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagat 529  Q
    ||||||||||||||| || | |||||| | || | ||||||  ||||||||||||||||| || |||||||| | ||||| |||||||    
T  9191825 tcgaatttagatgatcgtaggcgatgagagggtcgttaagatgaaatgtaaaggaagataaggagttgtgtacttagtaaagaaagat 9191738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 60; Significance: 6e-25; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 31499 - 31360
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || ||||| ||||| |    
T  31499 tgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatattgaataaaggagaagaaatttataacatgtgattgacccaagtataaat 31400  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  31399 agaaacattagaagttagaagagtcacttttgttgaacgt 31360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 722 - 829
Target Start/End: Complemental strand, 29571 - 29465
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||| ||  ||||| || ||||||||    
T  29571 aggttagataataactttaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgtgaacaagtaataagatataaa 29474  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  29473 gtcgtttta 29465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 692 - 777
Target Start/End: Original strand, 3239 - 3324
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 777  Q
    ||||||||| ||| ||| ||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  3239 ggaaagttgttgaagtctaatttaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggacgatg 3324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 53; Significance: 9e-21; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 383 - 530
Target Start/End: Complemental strand, 1875 - 1730
Alignment:
Q  383 aagatgattgttagataggaatgtataaggtgtaaaaatggataaagaatagagtgcgatcgaatttagatgatggtggacgatgaaatggacattaaga 482  Q
    ||||||| |||||||||| |||||||||||||||||| || ||| |||||| || |  ||| |||||||||||| ||  ||||||| | || | ||||||    
T  1875 aagatgaatgttagatagtaatgtataaggtgtaaaagtgaatagagaatatagag--atctaatttagatgattgtaaacgatgagagggtcgttaaga 1778  T
Q  483 caaaatgtaaaggaagatagggggttgtgtattaagtaacgaaagata 530  Q
    | |||||||| |||||||| || ||||| |||||||||| ||||||||    
T  1777 cgaaatgtaagggaagataaggagttgtatattaagtaatgaaagata 1730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 52; Significance: 4e-20; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 2275 - 2414
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    |||||||||||||||| |||||||||||||||| |   ||||||| | || |||| ||||||| | |  |||||| ||||||  || ||||| ||||| |    
T  2275 tgtagaatataagtttcaaataagtgggggaggggatgagtaaaataatagtgaacagaggaggagaaaattataacaagtgattgacccaattataaat 2374  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||||||||| ||| |||||||||| |||||||    
T  2375 agaaacattaggagttataagggtcacttttgctgaacgt 2414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 695 - 884
Target Start/End: Original strand, 4281 - 4471
Alignment:
Q  695 aagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaa 794  Q
    ||||| |||| ||| ||||||||||| | ||| |||||||||||||||||||||||| ||| | |||||  |||||||  | | ||||||||||||| ||    
T  4281 aagtttatgaagtcgaaagtaatgatcaagtgcgataataactttaaattagaatgaggttcaaattaggagaatggtttacg-tatagatgacgatcaa 4379  T
Q  795 cgtga-gaggaagtactacgatataaagttgttttaatggga-aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgta 884  Q
     |||| || |||||| || ||| ||||| ||  |||||| || ||||  |||||| ||| |||||||||||||  ||||  |||||||||||    
T  4380 tgtgaggacgaagtaataagatgtaaaggtgcattaatgagataatatgtatgaaggagttaatgacgatggttaggtagaacctagttgta 4471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 4e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 133032 - 132893
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || ||||| ||||| |    
T  133032 tgtagaatataagttttaaataagtggcggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaagtataaat 132933  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||| ||||||||  ||||||||||||||||||    
T  132932 agaaacattagaagttagaaaagtcacttttgttgaacgt 132893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 727 - 829
Target Start/End: Complemental strand, 131290 - 131189
Alignment:
Q  727 agataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgt 825  Q
    |||||||||||||||| ||| ||||||||||||||||| || | || ||||| |||| ||||||| ||||||||||  ||||| || |||||||||| ||    
T  131290 agataataactttaaaattaaaatgaagttaagattag-gggacggacgatg-tataaatgacgacgaacgtgagaacaagtaataagatataaagtcgt 131193  T
Q  826 ttta 829  Q
    ||||    
T  131192 ttta 131189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 4e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 51624635 - 51624766
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||  || |||||| ||||||| |   ||||| || |||  || ||||| ||||| |    
T  51624635 tgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgacccaagtataaat 51624734  T
Q  118 agaaacattaggagttagaagtgtcacttttg 149  Q
    | ||||||||||||||||||| ||||||||||    
T  51624735 ataaacattaggagttagaagagtcacttttg 51624766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 714 - 790
Target Start/End: Original strand, 1566683 - 1566758
Alignment:
Q  714 taatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacga 790  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||    
T  1566683 taatggtaaggtgggataataactttaaattagaacgaagttaagattagaggaatggacgatg-catagatgacga 1566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 13881859 - 13881965
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||| ||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||||||  ||||| || ||||||||    
T  13881859 aggttagataataacattaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgagaacaagtaataagatataaa 13881956  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  13881957 gtcgtttta 13881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 51626595 - 51626702
Alignment:
Q  722 aggtgagataataactttaaatt-agaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||||| | |||||||||| |||||| |  | || |||||| ||||||||||| ||||||||||  ||||| || ||||||||    
T  51626595 aggttagataataactttaaatttaaaatgaagttatgattagggagacggacgatgt-atagatgacgacgaacgtgagaacaagtaataagatataaa 51626693  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  51626694 gtcgtttta 51626702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10390285 - 10390223
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggag 80  Q
    ||||||||||||||||||||||||| ||||||| | | ||||||||| || ||| ||||||||    
T  10390285 tgtagaatataagttttaaataagttggggaggggaggagtaaaagaatagtgagtagaggag 10390223  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 15544349 - 15544312
Alignment:
Q  287 gggggttgtttaatttttaagatgatgttgttgttatg 324  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  15544349 gggggttgtttaattcttaagatgatgttgttgttatg 15544312  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 24852461 - 24852493
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggagg 50  Q
    |||||||||||||||||||||||||||||||||    
T  24852461 tgtagaatataagttttaaataagtgggggagg 24852493  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 43154163 - 43154209
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaaga 64  Q
    ||||||| |||||||||||||||||||||||||  || |||||||||    
T  43154163 tgtagaaaataagttttaaataagtgggggagggagggagtaaaaga 43154209  T

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Target: chr8 (Bit Score: 50; Significance: 6e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 26858960 - 26859085
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||| || ||| |||||||||| |  ||  || |||||| | ||||||||||||| |    
T  26858960 tgtagaatataagttttaaataagtggaggaggggaggagtaaaagaatagtgagtagaggagaagagaatcttaacaagtgaccggcccaaatataaat 26859059  T
Q  118 agaaacattaggagttagaagtgtca 143  Q
    |||||  |||||||||||||| ||||    
T  26859060 agaaaggttaggagttagaagagtca 26859085  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 10453914 - 10453980
Alignment:
Q  87 attatagcaagtggctggcccaaatataagtagaaacattaggagttagaagtgtcacttttgttga 153  Q
    |||||| |||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10453914 attataacaagtgactgacccaaatataaatagaaacattaggagttagaagggtcacttttgttga 10453980  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 692 - 777
Target Start/End: Complemental strand, 29294408 - 29294323
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 777  Q
    ||||||||| ||| ||||||  |||| |||||||||||||||||||||||||||| | |||||||||| ||| ||||||| |||||    
T  29294408 ggaaagttgctgaagtcaaatttaattataaggtgagataataactttaaattaggacgaagttaagagtaggggaatggacgatg 29294323  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 975 - 1034
Target Start/End: Complemental strand, 29294120 - 29294061
Alignment:
Q  975 tagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaa 1034  Q
    |||||||||||||||||| ||||| |||||| |||  ||||| |||||||||||||||||    
T  29294120 tagagagcctagaatagatgagaaaatagagtatgcccataaaatgaataataaaataaa 29294061  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 15728100 - 15728068
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggagg 50  Q
    |||||||||||||||||||||||||||||||||    
T  15728100 tgtagaatataagttttaaataagtgggggagg 15728068  T

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Target: scaffold0385 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 706 - 891
Target Start/End: Complemental strand, 14751 - 14563
Alignment:
Q  706 gtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa 805  Q
    |||||||||| |||||| |||||||||||| |||||||||| || |||||||||||||  |||  ||||||| |||||||||||| ||| ||||||  ||    
T  14751 gtcaaaagtattgataaagtgagataataaatttaaattaggattaagttaagattaggagaaaagtcgatg-tatagatgacgacgaatgtgagaacaa 14653  T
Q  806 -gtactacgatataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagaggg 891  Q
     ||| || |||||||||| ||||| |||| ||  |||||| | ||||||| |||| ||||||||| || |  |||||| ||| |||||||    
T  14652 ggtaataagatataaagtcgttttaaatgagaagaataatcacgaaagagttaataacgatggtggggaagaacctaggtgtctagaggg 14563  T

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Target: scaffold0145 (Bit Score: 45; Significance: 5e-16; HSPs: 2)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 674 - 757
Target Start/End: Complemental strand, 13131 - 13047
Alignment:
Q  674 tataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaa 757  Q
    |||||||||||||||||  ||||||||| ||| ||  ||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  13131 tataatgaagttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaatagaatgaagttaa 13047  T

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Target: scaffold0145; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 14977 - 14928
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagta 67  Q
    |||||||  |||||||| ||||||||||||||| | ||||||||||||||    
T  14977 tgtagaaagtaagtttttaataagtgggggaggggagaagtaaaagagta 14928  T

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Target: scaffold0524 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 3598 - 3685
Alignment:
Q  238 cgagataagtgggagaatcctttcactttacggtaa-cttattctatcacgggggttgtttaatttttaagatgatgttgttgttatg 324  Q
    |||| |||| ||||||||||||| |||||| ||||  |||||| ||| ||||||||||||||||| ||||||| ||||||||||||||    
T  3598 cgaggtaagggggagaatcctttaactttagggtattcttattttataacgggggttgtttaattcttaagattatgttgttgttatg 3685  T

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Target: scaffold0218 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 16846 - 16707
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||| ||| | | | ||||||||  || |||||| ||||||| |   ||||| || |||  || || |  ||||| |    
T  16846 tgtagaatataagttttaaataagtggaggatgggaggagtaaaagtatagtgaataaaggagaagaaagttataacatgtgattgaccaacgtataaat 16747  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  16746 agaaacattagaagttagaagagtcacttttgttgaacgt 16707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 722 - 829
Target Start/End: Complemental strand, 14890 - 14784
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||||||  || || || ||||||||    
T  14890 aggttagataataactttaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgagaacaactaataagatataaa 14793  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  14792 gtcgtttta 14784  T

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Target: scaffold0063 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 25854 - 25993
Alignment:
Q  18 tgtagaatataagttttaaataagtgggggaggagggaagtaaaagagtaatgaatagaggagaaaatgattatagcaagtggctggcccaaatataagt 117  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||  |  ||| || ||||||| |   ||||| || ||   || ||||| ||||| |    
T  25854 tgtagaatataagttttaaataagtgggggaggggaggagtaaaagtatggtgagtaaaggagaagaaagttataacatgttattgacccaagtataaat 25953  T
Q  118 agaaacattaggagttagaagtgtcacttttgttgaacgt 157  Q
    ||||||||||| ||||||||| |||||||||||| |||||    
T  25954 agaaacattagaagttagaagagtcacttttgtttaacgt 25993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 692 - 801
Target Start/End: Complemental strand, 1809 - 1701
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 791  Q
    ||||||||| ||| ||| ||||||| |||||| |||||||||||||||||| |||||||| |||||  ||||   ||||||||||| |||||||||| |     
T  1809 ggaaagttgctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatg-tatagatgactac 1711  T
Q  792 gaacgtgaga 801  Q
    ||| ||||||    
T  1710 gaatgtgaga 1701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 722 - 829
Target Start/End: Original strand, 13172 - 13278
Alignment:
Q  722 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 820  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| | || || |||||| ||||||||||| |||| |||||  |||||||| ||||||||    
T  13172 aggttagataataactttaaaattaaaatgaagttaagattag-gaaacggacgatgt-atagatgacgacgaacatgagaacaagtactaagatataaa 13269  T
Q  821 gttgtttta 829  Q
    || ||||||    
T  13270 gtcgtttta 13278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 692 - 830
Target Start/End: Complemental strand, 10640 - 10501
Alignment:
Q  692 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaa-gttaagattagaggaatggtcgatgttatagatgacga 790  Q
    ||||||||  ||| || |||||||||| ||| ||||||||||| ||||||||||| || || |||||||||||  |||| ||||||| ||||||||||||    
T  10640 ggaaagtttctgaagttaaaagtaatggtaaagtgagataatagctttaaattaggattaaggttaagattaggagaatagtcgatg-tatagatgacga 10542  T
Q  791 tgaacgtgagaggaa-gtactacgatataaagttgttttaa 830  Q
     ||| ||||||  || ||| || |||||||||| |||||||    
T  10541 cgaatgtgagaacaaggtaataagatataaagtcgttttaa 10501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 713 - 771
Target Start/End: Original strand, 87201 - 87259
Alignment:
Q  713 gtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 771  Q
    ||||||||||  |||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  87201 gtaatgataatatgagatgataactttaaattagaatcaagttaagagtagaagaatgg 87259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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