View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19148_high_4 (Length: 259)
Name: NF19148_high_4
Description: NF19148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19148_high_4 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 32716994 - 32716745
Alignment:
| Q |
1 |
gtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32716994 |
gtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgacacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtt |
32716895 |
T |
|
| Q |
101 |
tatgatatatatgaagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32716894 |
tatgatatatatggagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttc-aaaaaagcgaaaaaggtcatg |
32716796 |
T |
|
| Q |
201 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716795 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
32716745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 10638617 - 10638866
Alignment:
| Q |
1 |
gtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10638617 |
gtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgtcacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtt |
10638716 |
T |
|
| Q |
101 |
tatgatatatatgaagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10638717 |
tatgatatatatggagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttc-aaaaaagcgaaaaaggtcatg |
10638815 |
T |
|
| Q |
201 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10638816 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
10638866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 26662418 - 26662667
Alignment:
| Q |
1 |
gtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
26662418 |
gtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgacacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtt |
26662517 |
T |
|
| Q |
101 |
tatgatatatatgaagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26662518 |
tatgatatatatggagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttc-aaaaaagcgaaaaaggtcatg |
26662616 |
T |
|
| Q |
201 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662617 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
26662667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3037 - 3286
Alignment:
| Q |
1 |
gtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3037 |
gtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgacacatttgatggaaatacgtgaaaggaagaaaaaaattatagcaatgtt |
3136 |
T |
|
| Q |
101 |
tatgatatatatgaagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
3137 |
tatgatatatatggagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttc-aaaaaagtgaaaaaggtcatg |
3235 |
T |
|
| Q |
201 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3236 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
3286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 22902677 - 22902926
Alignment:
| Q |
1 |
gtctctaatatagtattatgatgtgcagcaannnnnnnnnnnnaatcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
22902677 |
gtctctaatatagtattatgatgtgcagcaattttttgtttttaatcatgacacatttgatggaaatacgtgaaaagaagaaaaaaattatagcaatgtt |
22902776 |
T |
|
| Q |
101 |
tatgatatatatgaagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22902777 |
tatgatatatatggagatgttgaattactttatgttgatgacaattgtgttatgctaccttgagttaagtaagcgttc-aaaaaagcgaaaaaggtcatg |
22902875 |
T |
|
| Q |
201 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22902876 |
ggatttttatgaaagaagtttaattagagaagtccattttcgtagaattat |
22902926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 46886019 - 46885989
Alignment:
| Q |
1 |
gtctctaatatagtattatgatgtgcagcaa |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
46886019 |
gtctctaatatagtattatgatgtgcagcaa |
46885989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 13341546 - 13341341
Alignment:
| Q |
45 |
atcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtttatgatatatatgaagatgttgaattactttatgttgatgacaa |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
13341546 |
atcatgacacatttgatggaaatgcgtgacaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatgacaa |
13341447 |
T |
|
| Q |
145 |
ttgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatgggatttttatgaaagaagtttaattagagaagtccattttcgta |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13341446 |
ttgtgttatgctaccttgagttaagtaagcgttc-aaaaaagcgaaaaaggtcatggaatttttatgaaagaagtttagttagagaagtccattttcgta |
13341348 |
T |
|
| Q |
245 |
gaattat |
251 |
Q |
| |
|
||||||| |
|
|
| T |
13341347 |
gaattat |
13341341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 13330631 - 13330426
Alignment:
| Q |
45 |
atcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtttatgatatatatgaagatgttgaattactttatgttgatgacaa |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13330631 |
atcatgacacatttgatggaaatgcgtgacaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatgacaa |
13330532 |
T |
|
| Q |
145 |
ttgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatgggatttttatgaaagaagtttaattagagaagtccattttcgta |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13330531 |
ttgtgttatgctaccttgagttaagtaagcgtt-tgaaaaagcgaaaaaggtcatggaatttttatgaaagaagtttagttagagaagtccattttcgta |
13330433 |
T |
|
| Q |
245 |
gaattat |
251 |
Q |
| |
|
||||||| |
|
|
| T |
13330432 |
gaattat |
13330426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 5671079 - 5670874
Alignment:
| Q |
45 |
atcatgacacatttgatggaaatacgtgaaaggaagnnnnnnnttatagcaatgtttatgatatatatgaagatgttgaattactttatgttgatgacaa |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5671079 |
atcatgacacatttgatggaaatgcgtgacaggaagaaaaaaattatagcaatgtttatgatatatatggagatgttgaattactttatgttgatgacaa |
5670980 |
T |
|
| Q |
145 |
ttgtgttatgctaccttgagttaagtaagcgttcnnnnnnngcgaaaaaggtcatgggatttttatgaaagaagtttaattagagaagtccattttcgta |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5670979 |
ttgtgttatgctaccttgagttaagtaagcgtt-tgaaaaagcgaaaaaggtcatggaatttttatgaaagaagtttagttagagaagtccattttcgta |
5670881 |
T |
|
| Q |
245 |
gaattat |
251 |
Q |
| |
|
||||||| |
|
|
| T |
5670880 |
gaattat |
5670874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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