View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19148_low_3 (Length: 261)

Name: NF19148_low_3
Description: NF19148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19148_low_3
NF19148_low_3
[»] chr1 (2 HSPs)
chr1 (12-244)||(22902463-22902695)
chr1 (12-147)||(46886001-46886135)
[»] chr2 (3 HSPs)
chr2 (12-244)||(26662207-26662436)
chr2 (79-147)||(26666243-26666311)
chr2 (78-147)||(26662004-26662073)
[»] chr6 (1 HSPs)
chr6 (86-244)||(19702441-19702600)
[»] scaffold0586 (2 HSPs)
scaffold0586 (170-244)||(10192-10266)
scaffold0586 (12-85)||(2982-3055)
[»] chr8 (4 HSPs)
chr8 (12-86)||(10638561-10638635)
chr8 (12-86)||(32716976-32717050)
chr8 (210-244)||(10638238-10638272)
chr8 (210-238)||(32717339-32717367)
[»] chr7 (1 HSPs)
chr7 (172-244)||(38935513-38935585)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 22902695 - 22902463
Alignment:
Q  12 ataatactatattagagacataggaattacaccatatataacattctaaacagagcactatcatccaaatacatagtgattccaaatttgacaaatctca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  22902695 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatacatagtgattccaaatttgacaaatctca 22902596  T
Q  112 ctttcttagataatatttcacacttgggaatatcatgatcgaaaaaacaaaagaatgccaaattgtgcacagagatataacattgaacatcatactactt 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22902595 ctttcttagataatatttcacacttgggaatatcatgatggaaaaaacaaaagaatgtcaaattgtgcacagagatataacattgaacatcatactactt 22902496  T
Q  212 gacttagattatgtaccacatcttgcagatttt 244  Q
    |||||||||||||||||||||||| ||||||||    
T  22902495 gacttagattatgtaccacatcttacagatttt 22902463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 46886001 - 46886135
Alignment:
Q  12 ataatactatattagagacataggaattacaccatatataacattctaaacagagcactatcatccaaatacatagtgattccaaatttgacaaatctca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||| |||||||||| |||||||||||||||||    
T  46886001 ataatactatattagagacataggaattacaccatatataacattctaaacagaggacaaacatcc-aatatatagtgattctaaatttgacaaatctca 46886099  T
Q  112 ctttcttagataatatttcacacttgggaatatcat 147  Q
    ||||||||||||| |||| |||||||||||||||||    
T  46886100 ctttcttagataaaattttacacttgggaatatcat 46886135  T

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Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 26662436 - 26662207
Alignment:
Q  12 ataatactatattagagacataggaattacaccatatataacattctaaacagagcactatcatccaaatacatagtgattccaaatttgacaaatctca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  26662436 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatatatagtgattccaaatttgacaaatctca 26662337  T
Q  112 ctttcttagataatatttcacacttgggaatatcatgatcgaaaaaacaaaagaatgccaaattgtgcacagagatataacattgaacatcatactactt 211  Q
    ||||||||||||||||||||||||||| ||||||||||| |   ||||||||||||| |||||| |||||| |||| |||||||||||||||||||||||    
T  26662336 ctttcttagataatatttcacacttggaaatatcatgatgg---aaacaaaagaatgtcaaattatgcacaaagatgtaacattgaacatcatactactt 26662240  T
Q  212 gacttagattatgtaccacatcttgcagatttt 244  Q
    |||||||||||||||||||||||||||||||||    
T  26662239 gacttagattatgtaccacatcttgcagatttt 26662207  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 26666311 - 26666243
Alignment:
Q  79 aatacatagtgattccaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcat 147  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  26666311 aatatatagtgattccaaatttgacaaatctcactttcttagataatatgtcacacttgggaacatcat 26666243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 26662073 - 26662004
Alignment:
Q  78 aaatacatagtgattccaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcat 147  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  26662073 aaatatataatgattccaaatttgacaaatctcactttcttagataatatgtcacatttgggaacatcat 26662004  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 86 - 244
Target Start/End: Complemental strand, 19702600 - 19702441
Alignment:
Q  86 agtgattccaaatttgacaaatctcactttcttagataatatttcacacttgggaatatcatgatcgaaaaaacaaaagaat-gccaaattgtgcacaga 184  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19702600 agtgattttaaatttgacaaatttcactttcttagataatatttcacacttgggaatatcatgatggaaaaaacaaaagaattgccaaattgtgcacaga 19702501  T
Q  185 gatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagatttt 244  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19702500 gatataacattgaacatcatactacttgtcttagattatgtaccacatcttgcagatttt 19702441  T

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Target: scaffold0586 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 10266 - 10192
Alignment:
Q  170 caaattgtgcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagatttt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10266 caaattgtgcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagatttt 10192  T

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Target: scaffold0586; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 3055 - 2982
Alignment:
Q  12 ataatactatattagagacataggaattacaccatatataacattctaaacagagcactatcatccaaatacat 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  3055 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatacat 2982  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 10638635 - 10638561
Alignment:
Q  12 ataatactatattagagacataggaattacaccatatataacattctaaacagagcactatcatccaaatacata 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10638635 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatacata 10638561  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 32716976 - 32717050
Alignment:
Q  12 ataatactatattagagacataggaattacaccatatataacattctaaacagagcactatcatccaaatacata 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  32716976 ataatactatattagagacataggaattacaccatatataacattctaaacagagcacaaacatccaaatacata 32717050  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 10638272 - 10638238
Alignment:
Q  210 ttgacttagattatgtaccacatcttgcagatttt 244  Q
    |||||||||||||||||||||||||||||||||||    
T  10638272 ttgacttagattatgtaccacatcttgcagatttt 10638238  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 32717339 - 32717367
Alignment:
Q  210 ttgacttagattatgtaccacatcttgca 238  Q
    |||||||||||||||||||||||||||||    
T  32717339 ttgacttagattatgtaccacatcttgca 32717367  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 38935585 - 38935513
Alignment:
Q  172 aattgtgcacagagatataacattgaacatcatactacttgacttagattatgtaccacatcttgcagatttt 244  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||    
T  38935585 aattgtgcacagagatataacattgaataacatactacttgactcagattatgtacctcatcttgcagatttt 38935513  T

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