View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19149_high_10 (Length: 406)
Name: NF19149_high_10
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 3241740 - 3242038
Alignment:
| Q |
1 |
tcccttatttcatccaaatactatgg-atagtgagacccattttaataaatcaactcttaagttcctctaatatattcttnnnnnnnnnn----tactat |
95 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3241740 |
tcccttatttcatccaaatactatgggatagtgagacctattttaataaatcaactcttaagttcctctaatatattcttaaaaaaaaaaaaaatactat |
3241839 |
T |
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| Q |
96 |
tgaacgttaaattgttggtagttaaatagatgataacaacaaatgaaaagtacttgaaaaggtggtagacttttggagttgcacacatgcactacttata |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3241840 |
tgaacgttaaattgttggtagttaaatagatgataacaacaaatgaaaagtacttgaaaaggtggtagacttttggagttgcacacatgcactacttata |
3241939 |
T |
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| Q |
196 |
tcttatataatatatatgtgttttccttcacattctcacaacatccattcgttccgttctaaagggtatctcttgaacacatgtttatgcattgttttc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3241940 |
tcttatataatatatatgtgttttccttcacattctcacaacatccattctttccgttctaaagggtatctcttgaacacatgtttatgcattgttttc |
3242038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 3242102 - 3242139
Alignment:
| Q |
358 |
gaagaattgccatagccttaggtactatcttctatatt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3242102 |
gaagaattgccatagccttaggtactatcttctatatt |
3242139 |
T |
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