View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19149_high_12 (Length: 329)
Name: NF19149_high_12
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 44164041 - 44163829
Alignment:
| Q |
18 |
taaaaaagactttaaaaatagtgaatgattggctgtcatcatcgatcagctaatatgaaaatataatgtaaacgtcggcagaaattaattgactaccatc |
117 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44164041 |
taaaaaagactttaaaaatagtgaatgactgactgtcatcatcgataaactaatatgaaaatataatgtaaacgtcggcagaaattaattgactaccatc |
44163942 |
T |
|
| Q |
118 |
ataataagaaacataataatattagttgaagagataaacaaattctcaacaacagaattcaaatggtagttcacgggcagtaatgtttggagcatacaga |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44163941 |
ataataagaaacataataatattagttgttgagataaacaaattctcaacaccagaattcaaatggtagttcacgggcagtaatgtttggagcatacaga |
44163842 |
T |
|
| Q |
218 |
taacatcaattga |
230 |
Q |
| |
|
||||||||||||| |
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|
| T |
44163841 |
taacatcaattga |
44163829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 17669489 - 17669447
Alignment:
| Q |
16 |
attaaaaaagactttaaaaatagtgaatgattggctgtcatca |
58 |
Q |
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|||||||| ||||||||||||||||||||| || ||||||||| |
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|
| T |
17669489 |
attaaaaatgactttaaaaatagtgaatgactgactgtcatca |
17669447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 41779887 - 41779929
Alignment:
| Q |
20 |
aaaaagactttaaaaatagtgaatgattggctgtcatcatcga |
62 |
Q |
| |
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|
| T |
41779887 |
aaaaagactttaaaaatagtgaatgactgtctgtcatcatcga |
41779929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 21336702 - 21336743
Alignment:
| Q |
18 |
taaaaaagactttaaaaatagtgaatgattggctgtcatcat |
59 |
Q |
| |
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||||||||||| |||||||||||||||| || |||||||||| |
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|
| T |
21336702 |
taaaaaagactctaaaaatagtgaatgactgactgtcatcat |
21336743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 49147150 - 49147113
Alignment:
| Q |
21 |
aaaagactttaaaaatagtgaatgattggctgtcatca |
58 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
49147150 |
aaaagactctaaaaatagtgaatgattgactgtcatca |
49147113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 11826388 - 11826432
Alignment:
| Q |
16 |
attaaaaaagactttaaaaatagtgaatgattggctgtcatcatc |
60 |
Q |
| |
|
||||||||||||| ||||||||||| |||| || ||||||||||| |
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|
| T |
11826388 |
attaaaaaagactctaaaaatagtgcatgactgactgtcatcatc |
11826432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 9840321 - 9840357
Alignment:
| Q |
20 |
aaaaagactttaaaaatagtgaatgattggctgtcat |
56 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |
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|
| T |
9840321 |
aaaaagactctaaaaatagtgaatgactggctgtcat |
9840357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 2280737 - 2280781
Alignment:
| Q |
16 |
attaaaaaagactttaaaaatagtgaatgattggctgtcatcatc |
60 |
Q |
| |
|
||||||||||||| ||||||||||| |||| || ||||||||||| |
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|
| T |
2280737 |
attaaaaaagactctaaaaatagtgcatgactgactgtcatcatc |
2280781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 1507481 - 1507521
Alignment:
| Q |
19 |
aaaaaagactttaaaaatagtgaatgattggctgtcatcat |
59 |
Q |
| |
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|||||| |||||||||||||||||||| || |||||||||| |
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|
| T |
1507481 |
aaaaaaaactttaaaaatagtgaatgactgactgtcatcat |
1507521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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