View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19149_high_17 (Length: 236)
Name: NF19149_high_17
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43808081 - 43808300
Alignment:
| Q |
1 |
tattgtatgtctatgttttgtagaagccagataaatataaatattgctttatttgggttataataattgtatgtgaaagcttaacatgacataattaata |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43808081 |
tattttatgtctatgttttgtagaagccagataaatataaatattgctttatttgggttataataattgtatgtgaaagcttaacataacataattaata |
43808180 |
T |
|
| Q |
101 |
tgcaggagtggctctgtagtagcaaagtatggtgacaagagtgtgtactttgatttggaggatattggcaacactacaggtcagtgggatttgtacggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43808181 |
tgcaggagtggctctgtagtagcaaagtatggtgacaagagtgtgtactttgatttggaggatattggcaacactacaggtcagtgggatttgtacggct |
43808280 |
T |
|
| Q |
201 |
cagatgcaccctcaccctac |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43808281 |
cagatgcaccctcaccctac |
43808300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University