View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19149_high_5 (Length: 638)

Name: NF19149_high_5
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19149_high_5
NF19149_high_5
[»] chr7 (13 HSPs)
chr7 (202-621)||(33305327-33305746)
chr7 (191-621)||(31540632-31541072)
chr7 (282-621)||(31573012-31573354)
chr7 (286-621)||(31532108-31532449)
chr7 (2-167)||(33305749-33305914)
chr7 (319-622)||(31618015-31618321)
chr7 (308-612)||(31585141-31585451)
chr7 (370-622)||(31604462-31604717)
chr7 (293-609)||(31594776-31595095)
chr7 (293-622)||(31607976-31608311)
chr7 (337-609)||(31614304-31614579)
chr7 (322-622)||(31575745-31576051)
chr7 (370-558)||(31439258-31439449)
[»] chr1 (1 HSPs)
chr1 (347-622)||(52174488-52174766)
[»] scaffold0394 (1 HSPs)
scaffold0394 (336-622)||(1704-1993)
[»] chr4 (2 HSPs)
chr4 (336-622)||(15063541-15063830)
chr4 (297-555)||(29083600-29083859)
[»] scaffold0254 (1 HSPs)
scaffold0254 (336-411)||(1758-1833)


Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 202 - 621
Target Start/End: Complemental strand, 33305746 - 33305327
Alignment:
Q  202 ttacattcacattttcaccattgtctttgctgaacttatttgattttttggaaccattcttcagtaagattggatttgtcacaaattgttggaagacaca 301  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305746 ttacattcacattttcaccgttgtctttgctgaacttatttgattttttggaaccattcttcagtaagattggatttgtcacaaattgttggaagacaca 33305647  T
Q  302 tatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttac 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33305646 tatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgacccaagtggtccttgaagcatttctatcactttac 33305547  T
Q  402 tcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaaca 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305546 tcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaaca 33305447  T
Q  502 attaaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccg 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305446 attaaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccg 33305347  T
Q  602 atcatttctagtattaacat 621  Q
    ||||||||||||||||||||    
T  33305346 atcatttctagtattaacat 33305327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 191 - 621
Target Start/End: Original strand, 31540632 - 31541072
Alignment:
Q  191 atataattacattacattcacattttcaccattgtctttgctgaacttatttgattttttggaaccattcttcagtaagattg--ga-tttgtc----ac 283  Q
    ||||| |||||||||| ||||||||||||  ||||||||||||||||||| || |||| ||||||||||||||| | ||  ||  || ||||||    ||    
T  31540632 atatagttacattacaatcacattttcacttttgtctttgctgaacttatctggttttatggaaccattcttcaattaggatgctgagtttgtctctaac 31540731  T
Q  284 aaattgttggaagacacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaa 383  Q
    |||||| ||||||||| ||||||| |||| ||||||| |  | ||||||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| |    
T  31540732 aaattgctggaagacaaatatgaagtttgcaatgatgacaatgcaggagaatataagaaaggctttggaggatatggcaccgactgaagtggtccttgta 31540831  T
Q  384 gcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttc 483  Q
    |||||||||  ||||||||||||||||||||||| | |||||| |||||||||||||| ||||| | |||||||||| ||||| ||||||||||||||||    
T  31540832 gcatttctaatactttactcattgatggtctatcggctggatttgtttgaatgcaccatagactcaccatagtaatcattcttaccatatcattttcttc 31540931  T
Q  484 ttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtg 580  Q
     | |||||||||  |||||||   ||||||||||  | ||||||||||||||||||||||||||| |||  ||||||| || |||||||||||||| |||    
T  31540932 ctttgagtttgctaaacaattagcaaggttattagcttgctcaagatccttataaatccaatctggaaaacacatttcagaagtacatgaccctccagtg 31541031  T
Q  581 tcataattctttcttcccccgatcatttctagtattaacat 621  Q
    |||||||||||||||||||| | ||||||||| ||||||||    
T  31541032 tcataattctttcttcccccaaccatttctagaattaacat 31541072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 282 - 621
Target Start/End: Complemental strand, 31573354 - 31573012
Alignment:
Q  282 acaaattgttggaagacacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttg 381  Q
    |||||||| |||||||| |||||||| |||||||||||||| ||| |||||| ||||  | ||| ||||| || ||||||||||| ||||||||||||||    
T  31573354 acaaattgctggaagacgcatatgaactttgtaatgatggcattttaggagaatatagaataggctttggagggtatggcactgaatcaagtggtccttg 31573255  T
Q  382 aagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttct 481  Q
     ||||||||||  ||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||| |||||| | ||||||| |||||||| |||||    
T  31573254 tagcatttctaatactttactcatcgatggtctatctaatgggttcgtttgaatgcaccatagactaaccatagttaactttcttaccatatcagtttct 31573155  T
Q  482 tcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccg 578  Q
    || || ||||||||  ||| |||   || ||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||| |||||||| |    
T  31573154 tcctcggagtttgctaaaccattcacaaagttattacttagctcaagatcattataaatccaatctggaaagtacatttcagaagtacacgaccctcctg 31573055  T
Q  579 tgtcataattctttcttcccccgatcatttctagtattaacat 621  Q
    ||||||| ||||||||||| || ||||||||||  ||||||||    
T  31573054 tgtcatagttctttcttccaccaatcatttctaaaattaacat 31573012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 286 - 621
Target Start/End: Original strand, 31532108 - 31532449
Alignment:
Q  286 attgttggaagacacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagc 385  Q
    |||| ||||||||||||||||| |||||| ||||||  ||| |||||| ||||||||||| ||||| |||||||||||||||| |||||||||||| |||    
T  31532108 attgctggaagacacatatgaagtttgtactgatggaattttaggagaatataagaaaggctttggaggatatggcactgactgaagtggtccttgtagc 31532207  T
Q  386 atttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttctt 485  Q
    |||||| | ||||||||||||||||||||||| ||||| || |||||||||||||| | ||| | |||||||||||||||  |||||||||||||||| |    
T  31532208 atttctgttactttactcattgatggtctatcggatgggtttgtttgaatgcaccataaactcaccatagtaatctttctcaccatatcattttcttcct 31532307  T
Q  486 ctgagtttgcagaacaatt---aagg---ttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgt 579  Q
    |||| ||| |  || ||||   ||||   ||||||| | | |||||||||||||||||||| || | |||||||||||| || |||||||||||||| ||    
T  31532308 ctgaattttctaaataattcacaaggttattattaccttgttcaagatccttataaatccagtcaggaaagtacatttcagaagtacatgaccctccagt 31532407  T
Q  580 gtcataattctttcttcccccgatcatttctagtattaacat 621  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  31532408 gtcataattctttcttcctccaatcatttctagaattaacat 31532449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 33305914 - 33305749
Alignment:
Q  2 tattcatgaggcctgcaacttactaaaaattaaaggagttgaatgagtaaaagaacatatgttcaaactcagatnnnnnnngtaatatctttaaattcat 101  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||    
T  33305914 tattcatgaggcctgcaacttactaaaagttaaaggagttgaatgagtaaaagaacatatgttcaaactcagataaaaaaagtaatatcttcaaattcat 33305815  T
Q  102 cagtagcaagaagttcacctactagaaacatatgaaaatgctttgaatttcaagcaaaatatgcaa 167  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33305814 tagtagcaagaagttcacctactagaaacatatgaaaatgcattgaatttcaagcaaaatatgcaa 33305749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 319 - 622
Target Start/End: Original strand, 31618015 - 31618321
Alignment:
Q  319 tggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatggtctatct 418  Q
    ||||||||| || || ||||||| ||| ||||| |||||||  || ||   |||||||||||| | ||||||||| |||||| |||| | ||||||||||    
T  31618015 tggcctttcgggtgaatataagacaggctttggaggatatgataccgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctatct 31618114  T
Q  419 gatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattac 515  Q
    ||||| || |||||||||||||| ||||| | || ||||||||||||   ||||||||||||||| || ||| |||  ||||||||   |||  |||| |    
T  31618115 gatggtttagtttgaatgcaccatagactcaccaaagtaatctttctgatcatatcattttcttcctccgagattgttgaacaatttaaaagagtattcc 31618214  T
Q  516 ttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtat 615  Q
     | ||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| || ||||| ||||| ||||||||||| || ||    
T  31618215 cttgctcaagatccttataaatccaatctggaaagtacatttcagaagtacatgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaat 31618314  T
Q  616 taacatg 622  Q
     ||||||    
T  31618315 caacatg 31618321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 308 - 612
Target Start/End: Original strand, 31585141 - 31585451
Alignment:
Q  308 atttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattg 407  Q
    ||||||| || |||||||||| ||||  ||||||  || ||||| ||||||||||||||   |||||||||||| | ||||||||| |||||| |||| |    
T  31585141 atttgtactggtggcctttcaagagaaaataagacgggctttggaggatatggcactgatgaaagtggtccttgcaacatttctattactttattcatcg 31585240  T
Q  408 atggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt--- 504  Q
     |||||| || ||||||||||||||||||||||| ||||| | |||||||||||||||  |||| |||||||||||||| ||| |||   |||||||       
T  31585241 gtggtctgtccgatggattcgtttgaatgcaccatagacttaccatagtaatctttctaaccatgtcattttcttcttcggagattgtcaaacaatttaa 31585340  T
Q  505 --aaggtt-attacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccg 601  Q
       ||||| ||||| | ||||||||||||||||||||||||||| |||||||||||| || | |||||| ||||| ||||| || ||||| || || |||    
T  31585341 aagaggttcattaccttgctcaagatccttataaatccaatctggaaagtacatttcagaagcacatgaacctcctgtgtcgtagttcttcctacctccg 31585440  T
Q  602 atcatttctag 612  Q
    || ||||||||    
T  31585441 ataatttctag 31585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 370 - 622
Target Start/End: Original strand, 31604462 - 31604717
Alignment:
Q  370 aagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgcc 469  Q
    |||||||||||| | ||||||||| |||||| |||| | ||||||||||||| | || |||||||||| ||| ||||| | || ||||||||||||  ||    
T  31604462 aagtggtccttgcaacatttctattactttattcatcggtggtctatctgatagtttagtttgaatgcgccacagactcaccaaagtaatctttctgacc 31604561  T
Q  470 atatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtac 566  Q
    |||||||||||||| || |||  ||  ||||||||   |||  |||||| | ||||||||||||||||||||||||||| |||||||||||| || ||||    
T  31604562 atatcattttcttcctccgagactgtcgaacaatttaaaagagtattaccttgctcaagatccttataaatccaatctggaaagtacatttcagaagtac 31604661  T
Q  567 atgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacatg 622  Q
    ||||||| || ||||| || ||||| ||||| ||||||||||| || || ||||||    
T  31604662 atgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatg 31604717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 293 - 609
Target Start/End: Original strand, 31594776 - 31595095
Alignment:
Q  293 gaagacacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttcta 392  Q
    ||||||| || ||| | ||||| || |||||||| ||||||  |||||| ||||||||| ||| |||  || ||   ||| |||||||| |||||||| |    
T  31594776 gaagacatatttgagagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtgaccgatgaaagcggtccttgtagcatttcaa 31594875  T
Q  393 tcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtt 492  Q
    | |||||| |||||| |||||||||| ||||||| |||||||||||||| || || | ||||||||||||| |  |||||||||||||||| |||||  |    
T  31594876 ttactttattcattggtggtctatctaatggatttgtttgaatgcaccataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaat 31594975  T
Q  493 tgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattc 589  Q
    ||   || ||||   ||| | ||||| | |||||||||||||||||||||| |||| |||||||||||| || ||||| |||||||| || | ||| |||    
T  31594976 tgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtctggaaagtacatttcagaagtacacgaccctccagtttgatagttc 31595075  T
Q  590 tttcttcccccgatcatttc 609  Q
    |||||||| || ||||||||    
T  31595076 tttcttcctccaatcatttc 31595095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 293 - 622
Target Start/End: Original strand, 31607976 - 31608311
Alignment:
Q  293 gaagacacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttcta 392  Q
    ||||||| |||||| | ||||| || ||||||||| |||||  ||||||  || ||||| ||||||| ||||||    || |||||||| | ||||||||    
T  31607976 gaagacatatatgacaattgtagtggtggcctttccggagaaaataagaccggctttggaggatatgacactgatgacagcggtccttgcaacatttcta 31608075  T
Q  393 tcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtt 492  Q
    | |||||| |||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||  ||||||||||||||||   |||| |    
T  31608076 ttactttattcattggtggtctatctgatggattcgtttgaatgcaccatagactcaccatagtaatctttctaaccatatcattttcttccgttgagat 31608175  T
Q  493 tg-cagaacaattaa-----ggttattacttagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataa 586  Q
    || ||   || ||||       |  |||| | |||||||||||||||||||||| |||| |||||||||||| || ||||||||||| || ||||| ||     
T  31608176 tgtcaacccatttaaaacagtatggttaccttgctcaagatccttataaatccagtctggaaagtacatttcagaagtacatgacccgccagtgtcgtag 31608275  T
Q  587 ttctttcttcccccgatcatttctagtattaacatg 622  Q
    ||||| ||||| || |||||||| || || ||||||    
T  31608276 ttcttccttcctccaatcatttcaagaatcaacatg 31608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 337 - 609
Target Start/End: Original strand, 31614304 - 31614579
Alignment:
Q  337 taagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatg 436  Q
    |||||| || ||||| ||||||| ||| ||   |||||||||||| | ||||||||| |||||| |||| | |||||| ||| |||| || |||||||||    
T  31614304 taagaagggatttggaggatatgacaccgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctgtctaatggtttagtttgaatg 31614403  T
Q  437 caccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttat 533  Q
    ||||||| ||| | || ||| ||||||||   ||||||||||||||| |||||| |||   |||||||   |||  | ||| || ||||||||| |||||    
T  31614404 caccaaacactcaccaaagtgatctttctaatcatatcattttcttcctctgagattgtcaaacaatttaaaagagtgttattttgctcaagattcttat 31614503  T
Q  534 aaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttc 609  Q
    |||||||||||| |||||||||||| || || ||||||||||| |||||||| ||||||||||| || ||||||||    
T  31614504 aaatccaatctggaaagtacatttcagaagtgcatgaccctccagtgtcatagttctttcttcctccaatcatttc 31614579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 322 - 622
Target Start/End: Original strand, 31575745 - 31576051
Alignment:
Q  322 cctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatggtctatctgat 421  Q
    ||||||||||||  |||||| ||| ||||| ||||||| ||| ||   |||||||||||| | ||||||||| |||||| |||| | ||| || ||| ||    
T  31575745 cctttcaggagaaaataagacaggctttggaggatatgacaccgaggaaagtggtccttgcaacatttctattactttattcatcggtggcctgtctaat 31575844  T
Q  422 ggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaattaa---ggttattact-- 516  Q
    || || |||||||| ||||| ||||| | || ||||||||||||  |||||||||||||||| |||||   ||    ||| ||||   |||||||| |      
T  31575845 ggtttggtttgaatacaccatagactcaccaaagtaatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattac 31575944  T
Q  517 -tagctcaagatccttataaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtat 615  Q
     | ||||||||||||||||||||||||||| ||| ||||||||||  ||||| |||||||| |||||||| ||||| ||||| ||||||||||| || ||    
T  31575945 cttgctcaagatccttataaatccaatctggaaaatacatttccggagtacacgaccctccagtgtcatagttcttccttcctccgatcatttcaagaat 31576044  T
Q  616 taacatg 622  Q
     ||||||    
T  31576045 caacatg 31576051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 558
Target Start/End: Complemental strand, 31439449 - 31439258
Alignment:
Q  370 aagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgcc 469  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| | ||| | ||||||||||||  || |     
T  31439449 aagtggtccttgtagcatttctattactttactcattgatggtctctctgatggatttgtttgaatgcaccataaactcaccatagtaatcttctttacg 31439350  T
Q  470 atatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaaaagtacatttc 558  Q
    ||||||||||||||||| ||| |||   ||  |||   |||  |||||| | |||||||||||||||| |||||||| | ||||||||||||    
T  31439349 atatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaatccggaaagtacatttc 31439258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 347 - 622
Target Start/End: Complemental strand, 52174766 - 52174488
Alignment:
Q  347 tttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagac 446  Q
    ||||| ||||||||||||||   |||||| ||||  | ||||||||| |||||| ||||   ||||||||| ||||| ||||||||||||||||| ||||    
T  52174766 tttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccatagac 52174667  T
Q  447 taatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatc 543  Q
    | | || |||||||||| |  |||||||||||||||| |||||| |||   |||||||   |||  |||| | | |||||||||||||||||||||| ||    
T  52174666 tcaccaaagtaatctttataaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatccagtc 52174567  T
Q  544 tgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacatg 622  Q
    || |||||||||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| || || ||||||    
T  52174566 tggaaagtacatttctgaagtacatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatg 52174488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 336 - 622
Target Start/End: Original strand, 1704 - 1993
Alignment:
Q  336 ataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaat 435  Q
    |||||| ||| ||||| |||||| | | ||| | |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1704 ataagataggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatggactatctgatggattcgtttgaat 1803  T
Q  436 gcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatcctta 532  Q
     ||||| | ||  | ||||||||||||  ||  |||||||||||||||||||||| ||||   || |||   |||   ||||| | ||||||||||||||    
T  1804 acaccacaaacccaccatagtaatcttctttagcatatcattttcttcttctgagattgccatactatttaaaagagaattaccttgctcaagatcctta 1903  T
Q  533 taaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacatg 622  Q
     | |||||||| ||||||||  |||| | || |   ||||| || ||||||||||||||| |||| ||| ||||||| || || ||||||    
T  1904 aatatccaatccgaaaagtatgtttcggctgcaagagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatg 1993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 336 - 622
Target Start/End: Complemental strand, 15063830 - 15063541
Alignment:
Q  336 ataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaat 435  Q
    |||||| ||| ||||| |||||| | | ||| | |||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  15063830 ataagataggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatggtctgtctgatggattcgtttgaat 15063731  T
Q  436 gcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatcctta 532  Q
     ||||| | |   | ||||||||||||  ||  |||||||||||||||||||||| ||||  ||| |||   ||||  ||||| | ||||||||||||||    
T  15063730 acaccacaaagccaccatagtaatcttctttagcatatcattttcttcttctgagattgccaaactatttaaaagggaattaccttgctcaagatcctta 15063631  T
Q  533 taaatccaatctgaaaagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacatg 622  Q
     | |||||||| | ||||||   ||| | ||||   ||||| || ||||||||||||||| |||| ||| ||||||| || || ||||||    
T  15063630 aatatccaatccggaaagtatgcttcggttgtatgagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatg 15063541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 297 - 555
Target Start/End: Original strand, 29083600 - 29083859
Alignment:
Q  297 acacatatgaaatttgtaatgatggcctttcaggagagtataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcac 396  Q
    ||||||||||| ||||||| ||||   |||||  ||| |||||||||   ||| |  |||||| |||||||  |||| ||||||| | | ||||||| |     
T  29083600 acacatatgaactttgtaacgatgatatttcataagaatataagaaaaactttagaagatatgccactgacataagtcgtccttgtaacttttctattat 29083699  T
Q  397 tttactcattgatggtctatctgatggattcgtttgaatgcaccaaagactaatcatagtaatctttcttgccatatcattttcttcttctgagtttgca 496  Q
    ||  |||||||||||||||||| ||| | ||||||||||| || | ||||| ||||| ||||||| |||  |||||||||||||||| | ||| ||||||    
T  29083700 tt--ctcattgatggtctatctcatgaaatcgtttgaatgtacgatagactcatcattgtaatctatctcaccatatcattttcttcctttgaatttgca 29083797  T
Q  497 gaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaaaagtacat 555  Q
     ||||| |   ||||| ||| ||| | | ||||||||||||| ||||||   ||||||||||    
T  29083798 aaacaaatcacaaggtcattcctttgttaaagatccttataagtccaatactaaaagtacat 29083859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 411
Target Start/End: Original strand, 1758 - 1833
Alignment:
Q  336 ataagaaaggttttgggggatatggcactgactcaagtggtccttgaagcatttctatcactttactcattgatgg 411  Q
    |||||| ||| ||||| |||||| | | ||| | |||||| ||||| ||||||||||| |||||||||||||||||    
T  1758 ataagataggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatgg 1833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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