View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19149_high_9 (Length: 426)
Name: NF19149_high_9
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 43188082 - 43188280
Alignment:
| Q |
10 |
acatcatcattgttacaactagaaagcatttagtgactcttactgagctacttgtcttatatctcggtgctcaactgctggattttgtgtattttttggt |
109 |
Q |
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| T |
43188082 |
acatcatcgttgttacaactagaaagcatttagtgactcttattgagctacttgtcttatatctcggtgctcaactgctggatttt----------tggt |
43188171 |
T |
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| Q |
110 |
gattctttcatcagttagcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagcttccattccaccactt |
209 |
Q |
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| T |
43188172 |
gattctttcatcagttggcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagcttccattccaccactt |
43188271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 264 - 426
Target Start/End: Original strand, 43188281 - 43188443
Alignment:
| Q |
264 |
caccagcactcctttactgttatagtcggtctttgtgtcacatcacggccaacctttgcgtacatgaacacacaaaacatattggtgtcaattgtcacat |
363 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43188281 |
caccagcactcctttactgtgatagtcggtctttgtgtcacatcacggccaacctttgcgtacatgaacgcacaaaacatattggtgtcaattgtcacat |
43188380 |
T |
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| Q |
364 |
cattcgcgagaagcttcaagtaaagttgttttgcctacttcatcatatacaatcaatgaactc |
426 |
Q |
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| T |
43188381 |
cattcgcgagaagcttcaagtaaagttgttttgcctacttcatcatatacaatcaatgaactc |
43188443 |
T |
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