View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19149_low_11 (Length: 341)
Name: NF19149_low_11
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 294
Target Start/End: Original strand, 6378705 - 6378924
Alignment:
| Q |
74 |
gaccgataaaagtttgccaagtaagagtggtgggaagggtgtataaataaatgtgtgtctatctatactttcccaaaagaaaatagctacaacactcact |
173 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
6378705 |
gaccaataaaagtttgccaagtaagaatggtgggaagggtgtataaataaatgtgtgtctatctatactt-ccgaaaagaaaatagcttcagcactcacc |
6378803 |
T |
|
| Q |
174 |
gttcacaattatattgtacaaggatatcactttttctcaacatgatgggctgtgagagaatggtagaataggnnnnnnngaaattaagatgctttctctc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
6378804 |
gttcacaattatattgtacaaggatatcactttttctcaacatgatgggatgtgagagaagggtagaataggaaaaaaagaaattatgatgctttctctc |
6378903 |
T |
|
| Q |
274 |
ttctttcttcgcatatatggg |
294 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
6378904 |
ttctttcttcgcaaatatggg |
6378924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 6378941 - 6378988
Alignment:
| Q |
291 |
tgggccccatcaaaattttgtctttcttgcctgtttctctgctcctcc |
338 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6378941 |
tgggccccatcaaaattctgtctttcttgcctgtttctctgctcctcc |
6378988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 28975658 - 28975583
Alignment:
| Q |
74 |
gaccgataaaagtttgccaagtaagagtggtgggaagggtgtat-aaataaatgtgtgtctatctatactttccca |
148 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
28975658 |
gaccaataaaagtttgccaagtaagagtggtggaaagggtgtataaaataaatgtatgtctatctatactttccca |
28975583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 26068211 - 26068286
Alignment:
| Q |
74 |
gaccgataaaagtttgccaagtaaga-gtggtgggaagggtgtataaataaatgtgtgtctatctatactttccca |
148 |
Q |
| |
|
|||| |||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26068211 |
gaccaataaaaatttgccaaatcagaagtggtgggaagggtgtataaataaaagtgtgtctatctatactttccca |
26068286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 21274703 - 21274772
Alignment:
| Q |
79 |
ataaaagtttgccaagtaaga-gtggtgggaagggtgtataaataaatgtgtgtctatctatactttccc |
147 |
Q |
| |
|
|||||| |||||||| | ||| |||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21274703 |
ataaaaatttgccaaatcagaagtggtgggaatggtgtataaataaaagtgtgtctatctatactttccc |
21274772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 48817631 - 48817557
Alignment:
| Q |
74 |
gaccgataaaagtttgccaagtaaga-gtggtgggaagggtgtataaataaatgtgtgtctatctatactttccc |
147 |
Q |
| |
|
|||| |||||| |||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48817631 |
gaccaataaaaatttgccaaatcagaagtggtgggaagggtgtataaataaaagtgtgtctatctatactttccc |
48817557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 44110439 - 44110486
Alignment:
| Q |
291 |
tgggccccatcaaaattttgtctttcttgcctgtttctctgctcctcc |
338 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
44110439 |
tgggccccaccaaaattttgtctgtctcgcctgtttctctgctcctcc |
44110486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University