View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19149_low_13 (Length: 293)

Name: NF19149_low_13
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19149_low_13
NF19149_low_13
[»] chr8 (1 HSPs)
chr8 (8-293)||(3242116-3242413)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 3242413 - 3242116
Alignment:
Q  8 cgaagaatatacgcatgcaaaactactatagtggactaaacttaatttcggataaggatttgatc-------tctttttaggtcattttgatccacttgc 100  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||| |||||    
T  3242413 cgaataatatacgcatgcaaaactactatagtggacttaacttaatttcggataaggatttgatcatttatctctttttaggtcattttgatccgcttgc 3242314  T
Q  101 atataaattttcaagctttaaacctaaagttcatatgcaa-----ggtgacgaaaaatagttttaccaacttaaaaaattatcaacaccatagctattag 195  Q
    |||| ||||||||| ||||||||||||||||||||| |||     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3242313 atatgaattttcaaactttaaacctaaagttcatattcaaacatcggtgacgaaaaatagttttaccaacttaaaaaattatcaacaccatagccattag 3242214  T
Q  196 caaaacatatgttttcgtatcagatattataaaatcaaaattgccataaaaaacagttggatatatacaccaacaatatagaagatagtacctaaggc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3242213 caaaacatatgttttcgtatcagatattataaaatcaaaattgccataaaaaacagttggatatatacatcaacaatatagaagatagtacctaaggc 3242116  T

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