View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19149_low_14 (Length: 255)

Name: NF19149_low_14
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19149_low_14
NF19149_low_14
[»] chr4 (4 HSPs)
chr4 (1-244)||(33735634-33735877)
chr4 (54-244)||(33720980-33721170)
chr4 (33-242)||(33718963-33719172)
chr4 (54-244)||(33750434-33750624)
[»] chr3 (1 HSPs)
chr3 (193-242)||(45013999-45014048)
[»] chr7 (2 HSPs)
chr7 (190-242)||(6568891-6568943)
chr7 (190-242)||(6583050-6583102)
[»] chr1 (2 HSPs)
chr1 (195-227)||(50102277-50102309)
chr1 (195-228)||(47424881-47424914)
[»] chr8 (2 HSPs)
chr8 (193-228)||(8584915-8584950)
chr8 (199-244)||(38653235-38653280)
[»] chr5 (1 HSPs)
chr5 (199-239)||(2361316-2361356)
[»] chr2 (1 HSPs)
chr2 (124-224)||(45437332-45437432)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 33735877 - 33735634
Alignment:
Q  1 ttctcgtcctttatatcctccaaagggacagccacttctggatccaccacgttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735877 ttctcgtcctttatatcctccaaagggacaaccacttctggatccaccacgttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcc 33735778  T
Q  101 cacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33735777 cacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaat 33735678  T
Q  201 ctcagcagcccattttccccatggcctctgcctcactcctctgt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33735677 ctcagcagcccattttccccatggcctctgcctcactcctctgt 33735634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 33721170 - 33720980
Alignment:
Q  54 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 153  Q
    |||||| ||||||||||| | ||||||||| |||||||| || ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  33721170 cttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgtg 33721071  T
Q  154 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgt 244  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33721070 gtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctctgt 33720980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 33719172 - 33718963
Alignment:
Q  33 cacttctggatccaccacgttcttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagct 132  Q
    ||||||||| ||| | || | |||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || || |||||||| ||||||    
T  33719172 cacttctggttcctcaacatgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagct 33719073  T
Q  133 ctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcc 232  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  33719072 ctggcagcttcctccgccgtggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtc 33718973  T
Q  233 tcactcctct 242  Q
    ||||||||||    
T  33718972 tcactcctct 33718963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 33750624 - 33750434
Alignment:
Q  54 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 153  Q
    |||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  33750624 cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg 33750525  T
Q  154 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgt 244  Q
    | ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||| |||||||| || || |||||||||||||    
T  33750524 gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgt 33750434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 45013999 - 45014048
Alignment:
Q  193 tcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 242  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  45013999 tcacgaatctctgcagcccactttccccatggcctctgcctcacacctct 45014048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  190 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 242  Q
    |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  190 gggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 242  Q
    |||||||| || ||||| ||||||||||||||||| || || |||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 50102277 - 50102309
Alignment:
Q  195 acgaatctcagcagcccattttccccatggcct 227  Q
    |||||||||||||||||||||||||||||||||    
T  50102277 acgaatctcagcagcccattttccccatggcct 50102309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 47424914 - 47424881
Alignment:
Q  195 acgaatctcagcagcccattttccccatggcctc 228  Q
    ||||||||||||||||||| ||||||||||||||    
T  47424914 acgaatctcagcagcccatcttccccatggcctc 47424881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 8584950 - 8584915
Alignment:
Q  193 tcacgaatctcagcagcccattttccccatggcctc 228  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8584950 tcacgaatctcagcagcccatttgccccatggcctc 8584915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 38653235 - 38653280
Alignment:
Q  199 atctcagcagcccattttccccatggcctctgcctcactcctctgt 244  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||    
T  38653235 atctctgctgcccattttccccatggcctctgtcttactcctctgt 38653280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 2361316 - 2361356
Alignment:
Q  199 atctcagcagcccattttccccatggcctctgcctcactcc 239  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  2361316 atctccgccgcccattttccccatggtctctgcctcactcc 2361356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 45437432 - 45437332
Alignment:
Q  124 tcgtaagctctggcagcttcctccgccgtggtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatg 223  Q
    ||||| ||||| |||||||| || || ||| | || ||||| ||||||||||| ||  |   ||| |||||||| |||||||| ||||||||||||||||    
T  45437432 tcgtaggctcttgcagcttcttcagcagtgttgaaagttccgagccaaacacgaactccttttctcgggtcacggatctcagctgcccattttccccatg 45437333  T
Q  224 g 224  Q
    |    
T  45437332 g 45437332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University