View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19149_low_15 (Length: 255)

Name: NF19149_low_15
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19149_low_15
NF19149_low_15
[»] chr8 (2 HSPs)
chr8 (14-238)||(8828147-8828372)
chr8 (51-87)||(17694442-17694478)
[»] chr6 (1 HSPs)
chr6 (27-83)||(33020485-33020541)
[»] chr7 (1 HSPs)
chr7 (39-87)||(24614693-24614741)
[»] chr2 (3 HSPs)
chr2 (15-79)||(7294742-7294806)
chr2 (42-83)||(11764386-11764427)
chr2 (15-87)||(41555292-41555364)
[»] chr1 (4 HSPs)
chr1 (37-80)||(35527923-35527966)
chr1 (46-87)||(40618908-40618949)
chr1 (14-87)||(48131218-48131291)
chr1 (14-87)||(51046140-51046213)
[»] chr5 (3 HSPs)
chr5 (18-88)||(35597680-35597750)
chr5 (14-87)||(7713530-7713602)
chr5 (37-81)||(15105123-15105167)
[»] chr4 (2 HSPs)
chr4 (46-87)||(18903780-18903821)
chr4 (21-85)||(34968342-34968406)
[»] scaffold0161 (1 HSPs)
scaffold0161 (27-79)||(26704-26756)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 8828147 - 8828372
Alignment:
Q  14 gtggtggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcacgatttcataaacctttt-atttcatcac 112  Q
    ||||||| |||| ||||||| |||||| ||  |||||||||  ||| ||||||||||||||| ||||||||||| | |||||||||||| ||||||||||    
T  8828147 gtggtggccggactttgaaccataaaccttgcatattttataaattgtttttaacaactgagctaaactcacgagtacataaacctttttatttcatcac 8828246  T
Q  113 atcaagttgtgaaatcctaaatactacctagctaccttcattctccaatatggccacaataaagccattggtaacagaccttgtttccacccttaatcat 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  8828247 atcaatttgtgaaatcctaaatactacctagctaccttcattctccaatatggccacaatgaagccattggtaacagaccttgtttccacccttgatcat 8828346  T
Q  213 gtcccttcaaattttatcagacccat 238  Q
    ||||||||||||||||||||||||||    
T  8828347 gtcccttcaaattttatcagacccat 8828372  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 17694442 - 17694478
Alignment:
Q  51 ttatgcattatttttaacaactgagttaaactcacga 87  Q
    ||||||||| | |||||||||||||||||||||||||    
T  17694442 ttatgcattgtctttaacaactgagttaaactcacga 17694478  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 33020541 - 33020485
Alignment:
Q  27 tttgaactataaacattatatattttatgcattatttttaacaactgagttaaactc 83  Q
    |||||||| ||||| |||||||||||||||||||| ||||  |||||||||||||||    
T  33020541 tttgaactctaaaccttatatattttatgcattatatttactaactgagttaaactc 33020485  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 24614741 - 24614693
Alignment:
Q  39 acattatatattttatgcattatttttaacaactgagttaaactcacga 87  Q
    ||||||||||| ||||||||||||  || ||||||||||||||||||||    
T  24614741 acattatatatattatgcattattcctatcaactgagttaaactcacga 24614693  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 7294806 - 7294742
Alignment:
Q  15 tggtggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaa 79  Q
    |||||||||| ||||||||   |||| |||||||||||||||||||| | || ||||||||||||    
T  7294806 tggtggtcggggtttgaaccgcaaaccttatatattttatgcattatctataccaactgagttaa 7294742  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 11764427 - 11764386
Alignment:
Q  42 ttatatattttatgcattatttttaacaactgagttaaactc 83  Q
    |||||||| |||||||||||| ||| ||||||||||||||||    
T  11764427 ttatatatattatgcattattcttatcaactgagttaaactc 11764386  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 41555364 - 41555292
Alignment:
Q  15 tggtggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcacga 87  Q
    ||||||||| |||||||||| |  || |||||| | ||||||||| ||  || ||||||||||||||||||||    
T  41555364 tggtggtcgaagtttgaactttggaccttatatgtattatgcattgttcctaccaactgagttaaactcacga 41555292  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 35527966 - 35527923
Alignment:
Q  37 aaacattatatattttatgcattatttttaacaactgagttaaa 80  Q
    |||| |||||||| |||||||||||||||| |||||||||||||    
T  35527966 aaaccttatatatattatgcattatttttatcaactgagttaaa 35527923  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 40618949 - 40618908
Alignment:
Q  46 atattttatgcattatttttaacaactgagttaaactcacga 87  Q
    |||| ||||||||||| |||| ||||||||||||||||||||    
T  40618949 atatattatgcattatctttaccaactgagttaaactcacga 40618908  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 48131218 - 48131291
Alignment:
Q  14 gtggtggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcacga 87  Q
    ||||||||| |||||||||||  | || ||| |||| ||||||||||| | |  ||||||||||||||||||||    
T  48131218 gtggtggtcagagtttgaactccagaccttacatatattatgcattatctctgccaactgagttaaactcacga 48131291  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 51046213 - 51046140
Alignment:
Q  14 gtggtggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcacga 87  Q
    ||||||||||||||| |||||   ||| ||| |||||||||| ||| ||  || ||||||||||||||||||||    
T  51046213 gtggtggtcggagttcgaactccgaaccttacatattttatgtattgttcataccaactgagttaaactcacga 51046140  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 35597750 - 35597680
Alignment:
Q  18 tggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcacgat 88  Q
    |||||||||||||||| |  ||  |||||||| | |||  ||||||||| |||||||||||||||||||||    
T  35597750 tggtcggagtttgaaccacgaatcttatatatataatgtgttatttttaccaactgagttaaactcacgat 35597680  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 7713602 - 7713530
Alignment:
Q  14 gtggtggtcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcacga 87  Q
    ||||||||||| |||||||||  |||| ||  |||| ||||||||||||  || ||||||||||||||||||||    
T  7713602 gtggtggtcgg-gtttgaactccaaaccttgcatatattatgcattattcatatcaactgagttaaactcacga 7713530  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 15105123 - 15105167
Alignment:
Q  37 aaacattatatattttatgcattatttttaacaactgagttaaac 81  Q
    |||| |||||||| ||||||||| |||||| ||||||||||||||    
T  15105123 aaaccttatatatattatgcattgtttttaccaactgagttaaac 15105167  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 18903780 - 18903821
Alignment:
Q  46 atattttatgcattatttttaacaactgagttaaactcacga 87  Q
    |||| |||||||||||||||| |||||||| |||||||||||    
T  18903780 atatattatgcattatttttatcaactgagctaaactcacga 18903821  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 34968406 - 34968342
Alignment:
Q  21 tcggagtttgaactataaacattatatattttatgcattatttttaacaactgagttaaactcac 85  Q
    |||| ||| ||||| || || ||| |||| |||||||||||||||| |||||||||||| |||||    
T  34968406 tcggggttcgaactctagactttacatatattatgcattatttttaccaactgagttaagctcac 34968342  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 26756 - 26704
Alignment:
Q  27 tttgaactataaacattatatattttatgcattatttttaacaactgagttaa 79  Q
    |||||||| ||||| |||||||| |||||||||||   |||||||||||||||    
T  26756 tttgaactttaaaccttatatatattatgcattatccctaacaactgagttaa 26704  T

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