View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19149_low_17 (Length: 239)
Name: NF19149_low_17
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 33736063 - 33735879
Alignment:
| Q |
40 |
ctcttcacttgttattgaattcaagaactaaaagtgttccgtgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaat |
139 |
Q |
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| T |
33736063 |
ctcttgacttgttattgaattcaagaactaaaagtgttccatgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaat |
33735964 |
T |
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| Q |
140 |
cagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
224 |
Q |
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| T |
33735963 |
cagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
33735879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 33750847 - 33750691
Alignment:
| Q |
68 |
taaaagtgttccgtgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatc |
167 |
Q |
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| T |
33750847 |
taaaagtgttcccagttctggaatcagaagaatctccaccaaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatc |
33750748 |
T |
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| Q |
168 |
acaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
224 |
Q |
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| T |
33750747 |
acaatccatattattcccaaatccaatatttgtctcactttgcatttcttgattcat |
33750691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 33721327 - 33721214
Alignment:
| Q |
110 |
aatccataaacctcattagttgttgaaaatcagcttct---ccgatactatcccaaaaatcaca---attcttattactctcaaatcccatagttgtctc |
203 |
Q |
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| T |
33721327 |
aatccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctc |
33721228 |
T |
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| Q |
204 |
aatttgtatttctt |
217 |
Q |
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| T |
33721227 |
aatttgcatttctt |
33721214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 224
Target Start/End: Complemental strand, 33719341 - 33719209
Alignment:
| Q |
92 |
cagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcc |
191 |
Q |
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|||||||||||| | ||| ||||||||| |||| | |||||||||||||| ||| || || |||||| |||||||||||| ||||||| ||||||| || |
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| T |
33719341 |
cagaagaatctccagaaaattccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccc |
33719242 |
T |
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| Q |
192 |
catagttgtctcaatttgtatttcttgattcat |
224 |
Q |
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| T |
33719241 |
cgtcattgtttcaatttgcatttcttgattcat |
33719209 |
T |
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