View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19149_low_2 (Length: 686)

Name: NF19149_low_2
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19149_low_2
NF19149_low_2
[»] chr5 (8 HSPs)
chr5 (75-358)||(43188512-43188795)
chr5 (370-670)||(43191104-43191392)
chr5 (156-264)||(43190776-43190884)
chr5 (587-670)||(43188785-43188868)
chr5 (386-537)||(43191016-43191169)
chr5 (12-65)||(43188420-43188473)
chr5 (14-61)||(43182335-43182382)
chr5 (296-358)||(43190889-43190951)
[»] chr8 (2 HSPs)
chr8 (174-338)||(43196677-43196839)
chr8 (338-398)||(43196555-43196612)
[»] chr6 (1 HSPs)
chr6 (192-235)||(19106571-19106614)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 75 - 358
Target Start/End: Original strand, 43188512 - 43188795
Alignment:
Q  75 agcgagtaatccatagtaaacaatgtaccaaagtgatccacgtacaattttcccactttaggaggattttatagtttgtggtccatctgttcttcctgtt 174  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  43188512 agcgagtaatccatagtaaacaatgtaccaaagtaatccgcgtacaattttcccactttaggaggattttatagtttgtggttcatctattcttcctgtt 43188611  T
Q  175 gttcagccagtcgccgaagtgattctatcacacccatcatttccctgttaacctgttaaaagatcataaataagcaaaataagacctcttttatgtagag 274  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43188612 gttcagcctgtcgccgaagtgattctatcacacccatcatttccgtgttaacctgttaaaagatcataaataagcaaaataagacctcttttatgtagag 43188711  T
Q  275 caaaacaatacttaaaattctatatatttcaattacaaaagtaaatagctcatttcactaaatatttacaacaaaacttcaaac 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43188712 caaaacaatacttaaaattctatatatttcaattacaaaagtaaatagctcatttcactaaatatttacaacaaaacttcaaac 43188795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 370 - 670
Target Start/End: Original strand, 43191104 - 43191392
Alignment:
Q  370 catagacactgtccataatattaagtacctaaagattttccacaaaacttcaataattttcaatacatagacactgtcaacaaaactacagtaaattttt 469  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||| |||||  |||||||||||||||||||||||||||||||| || |||| |       
T  43191104 catagacactgtcaataatattaagtacctaaagatttgccaaaaaa-ttcaaacattttcaatacatagacactgtcaacaaaacttcactaaact--- 43191199  T
Q  470 gcaaagacactgtcaacgatattaagtacctaaaggtttgcaacaaaacttccaacattttctatacagacactgacactgtcactatcaactacctaag 569  Q
    ||| ||||||||||||  | |||||||||||||||||||||||||||||||| ||||||||| || |||||| || ||     | ||| || ||||| ||    
T  43191200 gcatagacactgtcaataa-attaagtacctaaaggtttgcaacaaaacttcaaacattttcaatgcagacattg-ca-----aatattaagtacctcag 43191292  T
Q  570 acaacatagtaaacactaaactccatacagaattttacattttcaaaaaggtttgaaactttcatggtaaattaggattgctaatcatttcatagtagat 669  Q
    |||| |||| |||||||||||||||| |||||||| ||| ||| |||||||||| ||| || || |||||||||||| | ||||||||||  ||||||||    
T  43191293 acaatatagaaaacactaaactccatgcagaatttcaca-tttgaaaaaggtttaaaagttacacggtaaattaggagtactaatcattttgtagtagat 43191391  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 43190776 - 43190884
Alignment:
Q  156 tccatctgttcttcctgttgttcagccagtcgccgaagtgattctatcacacccatcatttccctgttaacctgttaaaagatcataaataagcaaaata 255  Q
    ||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43190776 tccatctgttcttcctgttgttcagcctgtcgctggagtgtttctatcacacccatcatttccctgttaacctgttaaaagatcataaataagcaaaatt 43190875  T
Q  256 agacctctt 264  Q
    |||||||||    
T  43190876 agacctctt 43190884  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 587 - 670
Target Start/End: Original strand, 43188785 - 43188868
Alignment:
Q  587 aaactccatacagaattttacattttcaaaaaggtttgaaactttcatggtaaattaggattgctaatcatttcatagtagatt 670  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43188785 aaacttcaaacagaattttacattttcaaaaaggtttgaaactttcatggtaaattaggattgctaatcgtttcatagtagatt 43188868  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 386 - 537
Target Start/End: Original strand, 43191016 - 43191169
Alignment:
Q  386 aatattaagtacctaaagattttccacaaaacttcaataattttcaatacatag---acactgtcaacaaaactacagtaaatttttgcaaagacactgt 482  Q
    |||||||||||||||| ||||| ||||||||| ||||| |||||||||||| ||   ||||||||||||||||| || || || ||| || |||||||||    
T  43191016 aatattaagtacctaatgatttgccacaaaacatcaatcattttcaatacacagacaacactgtcaacaaaacttcactatatatttacatagacactgt 43191115  T
Q  483 caacgatattaagtacctaaaggtttgcaacaaaacttccaacattttctataca 537  Q
    |||  ||||||||||||||||| ||||| | |||| ||| ||||||||| |||||    
T  43191116 caataatattaagtacctaaagatttgcca-aaaaattcaaacattttcaataca 43191169  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 43188420 - 43188473
Alignment:
Q  12 tcatcatatacaatcaatgaactcaattcattctatttatcattttctctttac 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43188420 tcatcatatacaatcaatgaactcaattcattctatttatcattttctctttac 43188473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 43182335 - 43182382
Alignment:
Q  14 atcatatacaatcaatgaactcaattcattctatttatcattttctct 61  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  43182335 atcatttacaatcaatgaactcaattcattctattcatcattttctct 43182382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 43190889 - 43190951
Alignment:
Q  296 atatatttcaattacaaaagtaaatagctcatttcactaaatatttacaacaaaacttcaaac 358  Q
    ||||||| | ||||||||||  | |||||||||||||||||||||| ||||||||||||||||    
T  43190889 atatattgctattacaaaagctattagctcatttcactaaatatttgcaacaaaacttcaaac 43190951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 174 - 338
Target Start/End: Complemental strand, 43196839 - 43196677
Alignment:
Q  174 tgttcagccagtcgccgaagtgattctatcacacccatcatttccctgttaacctgttaaaagatcataaataagcaaaataagacctcttttatgtaga 273  Q
    ||||||||| || || | ||||||||||| |||||||||||||||||||| |||| ||  |||| || ||||||||||| |||||||| ||| ||| |||    
T  43196839 tgttcagcctgttgctggagtgattctatgacacccatcatttccctgtttacctatt--aagaacagaaataagcaaagtaagacctttttcatgcaga 43196742  T
Q  274 gcaaaacaatacttaaaattctatatatttcaattacaaaagtaaatagctcatttcactaaata 338  Q
    |||||||||  ||| | |||  ||| |||  |||||||||||| |||||||   |||||||||||    
T  43196741 gcaaaacaaagcttcatattgaataaattgaaattacaaaagtcaatagcttgcttcactaaata 43196677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 43196612 - 43196555
Alignment:
Q  338 atttacaacaaaacttcaaacggtatcaaatgcatagacactgtccataatattaagtacc 398  Q
    |||| ||||||||||||||||  |||||||| |||||||||||||   |||||||||||||    
T  43196612 atttgcaacaaaacttcaaacattatcaaatacatagacactgtc---aatattaagtacc 43196555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 19106614 - 19106571
Alignment:
Q  192 agtgattctatcacacccatcatttccctgttaacctgttaaaa 235  Q
    ||||||||||| |||||||||||||| || ||||||||||||||    
T  19106614 agtgattctatgacacccatcatttctctattaacctgttaaaa 19106571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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