View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19149_low_3 (Length: 685)

Name: NF19149_low_3
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19149_low_3
NF19149_low_3
[»] chr2 (3 HSPs)
chr2 (10-685)||(13160969-13161644)
chr2 (513-601)||(13152097-13152185)
chr2 (538-601)||(13145358-13145421)


Alignment Details
Target: chr2 (Bit Score: 664; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 10 - 685
Target Start/End: Complemental strand, 13161644 - 13160969
Alignment:
Q  10 catcatcatccccctttatatcaagtcaagtgaaggggaaatcaatatatacctaaaatccaaccgtgtgtgtgtggaaatcaatattgaacacaaattt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161644 catcctcatccccctttatatcaagtcaagtgaaggggaaatcaatatatacctaaaatccaaccgtgtgtgtgtggaaatcaatattgaacacaaattt 13161545  T
Q  110 tgtttatattattggttccatatatacctatatcctccttaatttttgaacaaagtcaacaccactctaaaattatcagcaatgctatataaggaaaaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161544 tgtttatattattggttccatatatacctatatcctccttaatttttgaacaaagtcaacaccactctaaaattatcagcaatgctatataaggaaaaca 13161445  T
Q  210 gaaaaaatgcatcacgaaatcgaaattaatcagtaaaaaataagagccagtggaattcaagagaatcgtagcaactcatataatatagatagagtagtat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13161444 gaaaaaatgcatcacgaaatcgaaattaatcagtaaaaaataagagccagtggaactcaagagaatcgtagcaactcatataatatagatagagtagtat 13161345  T
Q  310 ataatatgaacctcaacattccaacattttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttatacatatataaaa 409  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161344 ataatatgaacctcaaccttccaacattttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttatacatatataaaa 13161245  T
Q  410 tcactcaaatcttgaaaaccttgattttttcttacatgtcactcttaagagaaatagttgcattgaagtcaccattgacaatttccccatttctttctcc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161244 tcactcaaatcttgaaaaccttgattttttcttacatgtcactcttaagagaaatagttgcattgaagtcaccattgacaatttccccatttctttctcc 13161145  T
Q  510 accaaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacatagcaaaa 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161144 accaaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaacatagcaaaa 13161045  T
Q  610 atataagtttctgtagcccaaggccttcgtggagtacctttaccaacatgacgaatcaaattatcaagataaatac 685  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13161044 atataagtttctgtagcccaaggccttcgtggagtacctttaccaacatgacgaatcaaattatcaagataaatac 13160969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 513 - 601
Target Start/End: Original strand, 13152097 - 13152185
Alignment:
Q  513 aaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca 601  Q
    |||||||||||| || || || ||||||||||||||||||||||||||||||||||| || || ||| |||| || |||||||||||||    
T  13152097 aaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaaca 13152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 601
Target Start/End: Original strand, 13145358 - 13145421
Alignment:
Q  538 ttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca 601  Q
    |||||||||| ||| |||||||||||||||||||| || ||| |||| |  |||||||||||||    
T  13145358 ttattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaaca 13145421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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