View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19149_low_6 (Length: 579)
Name: NF19149_low_6
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 10 - 579
Target Start/End: Original strand, 3640087 - 3640656
Alignment:
| Q |
10 |
gtgagatgaaaatggggttgaaggtttttaacatggttgttcataaagatgttatttcttggggtactgttatttgtggattggctatgaatgggtatgg |
109 |
Q |
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| T |
3640087 |
gtgatatgaaaatggggttgaaggtttttaacatggttgttcataaagatgttatttcttggggtactgttatttgtggattggctatgaatgggtatgg |
3640186 |
T |
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| Q |
110 |
taaacaagttgtgcagatgttttcacatatgctggttcatggggttttacctgatgatgtaacgtttattggtttgttgtctgcgtgtagccacgttggt |
209 |
Q |
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| T |
3640187 |
taaacaagttgtgcagatgttttcacatatgctggttcatggggttttacctgatgatgtaacgtttattggtttgttgtctgcgtgtagccacgttggt |
3640286 |
T |
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| Q |
210 |
ttggttagtgagggaatgatgttctttaaagctatgaaagatagttatggcattgtgccgcaaatgagtcattatggttgcatggttgatatgtatggac |
309 |
Q |
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| T |
3640287 |
ttggttagtgagggaatgatgttctttaaagctatgagagatagttatggcattgtgccacaaatgagtcattatggttgcatggttgatatgtatggac |
3640386 |
T |
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| Q |
310 |
gtgctggtttgtttgaggaagctgtggctttccttaaaggtatgcctgttgaagcggagggacctatttggagtgctcttcttcaggcttgtaaaattca |
409 |
Q |
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| T |
3640387 |
gtgctagtttgtttgaggaagctgtggctttccttaaaggtatgcctgttgaagcggagggacctatttggagtgctcttcttcaggcttgtaaaactca |
3640486 |
T |
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| Q |
410 |
tggtaatgaagagatgtctgaatggattaggggacaaatccatgataaaaatgttggcgttggtactcttgctttgttatccaatatttatgctggttct |
509 |
Q |
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| T |
3640487 |
tggtaatgaagagatgtctgaatggattaggggacaaatccatgataaaaatgttggcgttggtactcttgctttgttatccaatatttatgctagttct |
3640586 |
T |
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| Q |
510 |
gaaaggtgggatgatgctaataatgttcagaaaataatgagaggctctgggttgaagaaggtggctggat |
579 |
Q |
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| T |
3640587 |
gaaaggtgggatgatgctaataatgttcggaaaataatgagaggcactgggttgaagaaggtggctggat |
3640656 |
T |
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