View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19149_low_8 (Length: 430)
Name: NF19149_low_8
Description: NF19149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19149_low_8 |
 | |
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| [»] scaffold1344 (1 HSPs) |
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| [»] scaffold0854 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 18031804 - 18031397
Alignment:
| Q |
1 |
tacaagtattgtaggaaaacaacagaggatcttcgacgaactaaatttgagcgtgatttcggacatctcttggcaaagattgatgaacttgttaaagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031804 |
tacaagtattgtaggaaaacaacagaggatcttcgacgaactaaatttgagcgtgatttcggacatctcttggcaaagattgatgaacttgttaaagatg |
18031705 |
T |
|
| Q |
101 |
aacctggtgaacattacatttcagaactgcaatgccacaaagactatgaacccaagtactgtatggaagtacaagagattcttcggcgatgtcaaattaa |
200 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031704 |
aacctggtgaacattacatttcacaactgcaatgccacaaagactatgaacccaagtactgtatggaagtacaagagattcttcggcgatgtcaaattaa |
18031605 |
T |
|
| Q |
201 |
cagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagtta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031604 |
cagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagtta |
18031505 |
T |
|
| Q |
301 |
ctcatagacactaaacatattgattctcaagtaccaaatgnnnnnnnctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031504 |
ctcatagacactaaacatattgattctcaagtaccaaatgtttttttctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgt |
18031405 |
T |
|
| Q |
401 |
gcaacggt |
408 |
Q |
| |
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|||||||| |
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| T |
18031404 |
gcaacggt |
18031397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 27401555 - 27401410
Alignment:
| Q |
195 |
aattaacagtggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| || |||||||| || | | | ||||||| |
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| T |
27401555 |
aattaacagtggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatcttgttaagcttcacctgtcatggggttcagaacta |
27401456 |
T |
|
| Q |
295 |
aagttactcatagacactaaacatattgattctcaagtaccaaatg |
340 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27401455 |
cagtgcctcatagacactaaacatattgattctcaagtaccaaatg |
27401410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 18081417 - 18081285
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca |
304 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||||||| ||| || ||||| || |||| ||| |||| |
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| T |
18081417 |
ggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctca |
18081318 |
T |
|
| Q |
305 |
tagacactaaacatattgattctcaagtaccaa |
337 |
Q |
| |
|
|| ||| | |||||||||||||||||||||||| |
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|
| T |
18081317 |
tatacattgaacatattgattctcaagtaccaa |
18081285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 26183866 - 26183797
Alignment:
| Q |
211 |
agaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaag |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||| |
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| T |
26183866 |
agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaag |
26183797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 26212473 - 26212404
Alignment:
| Q |
211 |
agaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaag |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | |||||||||||||| |||||||||| ||||||| |
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|
| T |
26212473 |
agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaag |
26212404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 26117428 - 26117296
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca |
304 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| | |||||||||||||| |||||||| |||| ||| | || |||| ||| || |
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| T |
26117428 |
ggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgccttg |
26117329 |
T |
|
| Q |
305 |
tagacactaaacatattgattctcaagtaccaa |
337 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
26117328 |
tagacactaaacatattaattctcaagtaccaa |
26117296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 26145432 - 26145300
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca |
304 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||| || ||| | || |||| ||| || |
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| T |
26145432 |
ggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgcctag |
26145333 |
T |
|
| Q |
305 |
tagacactaaacatattgattctcaagtaccaa |
337 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
26145332 |
tagacactaaacatattaattctcaagtaccaa |
26145300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 26239692 - 26239560
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttcacttggaagatgatacagaactgaagttactca |
304 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| | |||||||||||||| || ||||||| || |||| | || |||| ||| || |
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|
| T |
26239692 |
ggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtaccttg |
26239593 |
T |
|
| Q |
305 |
tagacactaaacatattgattctcaagtaccaa |
337 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
26239592 |
tagacactaaacatattaattctcaagtaccaa |
26239560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 26624398 - 26624465
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttca |
272 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
26624398 |
ggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttca |
26624465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 18723537 - 18723482
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
18723537 |
ggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatct |
18723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 27370190 - 27370255
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagctt |
270 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
27370190 |
ggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt |
27370255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 27343892 - 27343947
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| || ||||||||||||||||| |
|
|
| T |
27343892 |
ggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatct |
27343947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 27370330 - 27370386
Alignment:
| Q |
348 |
ctccaagttaattgtactaaagctcaagggtatgaagaaattggaagaattgtgcaa |
404 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
27370330 |
ctccaagttggttgtactaaaactcaaggaaatgaagaatttggaagaattatgcaa |
27370386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 579 - 634
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||| ||||||||||||||||| |
|
|
| T |
579 |
ggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatct |
634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 4589 - 4534
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||| |||||||||||| |||| |
|
|
| T |
4589 |
ggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatct |
4534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 73361 - 73306
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatct |
260 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
73361 |
ggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatct |
73306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 8694882 - 8694815
Alignment:
| Q |
205 |
ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttca |
272 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
8694882 |
ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttca |
8694815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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