View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1914_high_15 (Length: 329)
Name: NF1914_high_15
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 5549816 - 5549954
Alignment:
| Q |
37 |
ctttaatcaagtaaaataattggaccgataatctacacttggtaaaagtattatcatatgagtaaattggtctatggtttttattatgaatcattcgtat |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5549816 |
ctttaatcaaataaaataattggaccgataatctacacttggtaaa-gtattatcatatgagtaaattggtctatggtttttattatgaatcattcgtat |
5549914 |
T |
|
| Q |
137 |
ccttgagaaaaagaaaatatactcactattctttagaagt |
176 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5549915 |
ccttgagaaaaagaaaatatagtcactattctttagaagt |
5549954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 5550022 - 5550088
Alignment:
| Q |
243 |
ttggtcaatatgaggagaatcatataaggaccacgtaatatggaaattaaaataaatatgattgatg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5550022 |
ttggtcaatatgaggagaatcatataaggactacgtaatatggaaattagaataaatatgattgatg |
5550088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 5567724 - 5567817
Alignment:
| Q |
37 |
ctttaatcaagtaaaataattggaccgata--atctacacttggtaaaagtattatcatatgagtaaattggtctatggtttttattatgaatca |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || | ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5567724 |
ctttaatcaaataaaataattggaccgatataatttgcacttggaaaaagtattattatatgagtaaattggtctatgg-ttttattatgaatca |
5567817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 5558581 - 5558647
Alignment:
| Q |
243 |
ttggtcaatatgaggagaatcatataaggaccacgtaatatggaaattaaaataaatatgattgatg |
309 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5558581 |
ttggtcaatatgaggagaaccatataaggactacgtaatatggaaattagaataaatatgattgatg |
5558647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 5558389 - 5558477
Alignment:
| Q |
37 |
ctttaatcaagtaaaataattggaccgataatctacacttggtaaaagtattatcatatgagtaaattggtctatggtttttattatgaatca |
129 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||| ||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
5558389 |
ctttaatcaaatgaaataataggaccgataatgtacacttggcaaaagtattattatatgaataa----gtctatggtttttattatgaatca |
5558477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 5532680 - 5532729
Alignment:
| Q |
80 |
aaaagtattatcatatgagtaaattggtctatggtttttattatgaatca |
129 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5532680 |
aaaagcattattatatgagtaaattggtttatggtttttattatgaatca |
5532729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University