View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1914_high_27 (Length: 233)
Name: NF1914_high_27
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_high_27 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 22796376 - 22796193
Alignment:
| Q |
50 |
acttaatatctcccttgacaagttcaaccagccctttaatcgctctagcacgaacatttagagcttcaaaatcttctgttttctcgttctccacaagctc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22796376 |
acttaatatctcccttgacaagttcaaccagccctttaatcgctctagcacgaacatttagagcttcaaaatcttctgttttctcgttctccacaagctc |
22796277 |
T |
|
| Q |
150 |
aatgcatttatcagccaccgcagatgccatatcatcctatgtttgaaaaaatatctaaataaacacaattgttctgtaaaaaag |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22796276 |
aatgcatttatcagccaccgcagatgccatatcatcctatgtttgaaaaaatatctaaataaacacaattgttctgtaaaaaag |
22796193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 40018462 - 40018672
Alignment:
| Q |
18 |
caaatagcattaattaagcactgcctgacttaacttaatatctcccttgacaagttcaaccagccctttaatcgctctagcacgaacatttagagcttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||| |
|
|
| T |
40018462 |
caaatagcattaattaagcactgcctgactt-----aatatctcccttgacaagttcaaccagtcctttaatcactctagcaagagcatttagagcttca |
40018556 |
T |
|
| Q |
118 |
aaatcttctgttttctcgttctccacaagctcaatgcatttatcagccaccgcagatgccatatcatcctatgtttgaaaaaatatctaaataaacacaa |
217 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
40018557 |
aaatcatctgttttcttgttctccacgagctcaatgcatttatcagccactgcagatgccttatcatcttatgtatgaaaaagaatctaaataaacacaa |
40018656 |
T |
|
| Q |
218 |
ttgttctgtaaaaaag |
233 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
40018657 |
tggttctgtaaaaaag |
40018672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 15870621 - 15870805
Alignment:
| Q |
50 |
acttaatatctcccttgacaagttcaaccagccctttaatcgctctagcacgaacatttagagcttcaaaatcttctgttttctcgttctccacaagctc |
149 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15870621 |
acttaatatctcccttcacaagttcaacgagccctttaattgctctagcacgaatttttagagcttcaaaatcttctgttttctcgttctccacaagctc |
15870720 |
T |
|
| Q |
150 |
aatgcatttatcagccaccgcagatgccatatcatcctatgt-ttgaaaaaatatctaaataaacacaattgttctgtaaaaaag |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||| | ||| |||||||||| |
|
|
| T |
15870721 |
aatgcatttatcagccaccgcagatgccatatcatcctatgtacggaaaaaatatccaaattaagacagtggttatgtaaaaaag |
15870805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University