View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_11 (Length: 407)
Name: NF1914_low_11
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 47404977 - 47404601
Alignment:
| Q |
16 |
gagttttcaagaaccaccaaatcttttgctatggtcgaccaaactcaaacgtatgagatttagatttaagttctcaagaacctccaaatcttttgctata |
115 |
Q |
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| T |
47404977 |
gagttttcaagaaccaccaaatcttttgctatggtcgaccaaactcaaacgtatgagatttagatttaagttctcaagaacctccaaatcttttgctata |
47404878 |
T |
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| Q |
116 |
atcgaccaacctcaaatgcatgaactttagctttaagttcccaggaacaatctacaccaaccttgtatgagctttccatgtgtaacttctcgggtactca |
215 |
Q |
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| T |
47404877 |
atcgaccaacctcaaatgcatgaactttagctttaagttcccaggaacaatctacaccaaccttgtatgagctttccatgtgtaacttctcgggtactca |
47404778 |
T |
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| Q |
216 |
tcttgcactcaagaaaccaggacatagcagtaaaccttaacctgtaggaaattacacttggttattagtgattgatttgtttgcagaaatatgactaatg |
315 |
Q |
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| T |
47404777 |
tcttgcactcaagataccaggacatagcagtaaaccttaacctgtaggaaattacacttggttgttagtgattgatttgtttgcagaaatatgaccaatg |
47404678 |
T |
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| Q |
316 |
aaattctcattcttgtgcctcttgcttctactgttgatgtcactttgttttatgattatctatttcggtttgctgat |
392 |
Q |
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| T |
47404677 |
acattctcattcttgtgcctcttgcttctactgttgatgtcactttgttttatgattatctatttcggtttgctgat |
47404601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 47412989 - 47412935
Alignment:
| Q |
276 |
gttattagtgatt-gatttgtttgcagaaatatgactaatgaaattctcattctt |
329 |
Q |
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| T |
47412989 |
gttattagtgattagatttgtttgcagaaatatgatcaatggcattctcattctt |
47412935 |
T |
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