View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_12 (Length: 400)
Name: NF1914_low_12
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 77 - 384
Target Start/End: Original strand, 40867146 - 40867453
Alignment:
| Q |
77 |
atgaaatctattatctattatattgcaatacctctttctaaaatataaaaatgtgaaatctggttggacgtatgtatagtagtgtgtacaaaaaataagt |
176 |
Q |
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| T |
40867146 |
atgaaatctattatctattatattgcaatacctctttctaaaatataaaaatgtgaaatctggttggacgtatgtatagtagtgtgtacaaaaaataagt |
40867245 |
T |
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| Q |
177 |
tcattaggagtacacacacgacggtcatttatagcaataggcattacaacttgtagagagnnnnnnncatttacataagtggaataccttttcgtgaaga |
276 |
Q |
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| T |
40867246 |
tcattaggagtacacacacgacggtcatttatagcaataggcattacaacttgtagagagaaaaaaacatttacataagtggaataccttttcgtgaaga |
40867345 |
T |
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| Q |
277 |
caaaaggattgtcaattatcttgcaccataattcacaaacatggaaaatgaaatgcaccataattcataaagctaaacttttttctttggtttcatacac |
376 |
Q |
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| T |
40867346 |
caaaaggattgtcaattatcttgcaccataattcacaaacatggaaaatgaaatgcaccataattcataaagctaaacttttttctttggtttcatacac |
40867445 |
T |
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| Q |
377 |
agatatat |
384 |
Q |
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|||||||| |
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| T |
40867446 |
agatatat |
40867453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 40867053 - 40867132
Alignment:
| Q |
13 |
aatataaattaagtaaaatgatattgaatgatttaacattgatataatattacatcagcatagtatgaaatctattatct |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
40867053 |
aatataaattaagtaaaatgatattgaatgatttaacattgatataatattatatcggcatagtatgaaatctattatct |
40867132 |
T |
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