View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1914_low_14 (Length: 340)
Name: NF1914_low_14
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_14 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23426988 - 23427304
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23426988 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
23427087 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427088 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
23427187 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427188 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
23427287 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23427288 |
aaatgtgttctgcactc |
23427304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 19816999 - 19816905
Alignment:
| Q |
223 |
gtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19816999 |
gtaaagtttttgagaaacttgtattaaggattgatcttcatcgtcttagagataattgtcttcatgagggggagaaataaatgtcttctgcactc |
19816905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 12435999 - 12435683
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12435999 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
12435900 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12435899 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
12435800 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12435799 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
12435700 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12435699 |
aaatgtgttctgcactc |
12435683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 42410613 - 42410929
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42410613 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
42410712 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42410713 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
42410812 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42410813 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
42410912 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42410913 |
aaatgtgttctgcactc |
42410929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 911499 - 911183
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
911499 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
911400 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
911399 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
911300 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
911299 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccctctaagagatatttgtcttcatgagggggagaaat |
911200 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
911199 |
aaatgtgttctgcactc |
911183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29333146 - 29333462
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29333146 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacatcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
29333245 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333246 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
29333345 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333346 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccatctaagagatatttgtcttcatgagggggagaaat |
29333445 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29333446 |
aaatgtgttctgcactc |
29333462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 12429535 - 12429217
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
12429535 |
attgtggtttatcctccggaaaaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaagaagaccg |
12429436 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12429435 |
aacaaaacacatttctccaaaattccttttcactcatgatcttcagaaggatggtgatatcaacattcaacaaattcggtcgtgtgataatcttgcagac |
12429336 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcat--gagggggagaa |
298 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || | ||||| | | |
|
|
| T |
12429335 |
gtttttacaaagtcactcccaagtaaagtttttgagaaacttgtactaaaaattggtcttcgtcgtctaagagatatttgtctttatgggggggggggga |
12429236 |
T |
|
| Q |
299 |
ataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12429235 |
ataaatgtgttctgcactc |
12429217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 13754018 - 13753707
Alignment:
| Q |
5 |
tggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaaca |
104 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13754018 |
tggtttattctccagaagaatggatgcaacaatcatttatgaagataatatagcatgcatttctcagttgaaagagggatacattaaaggagaccgaaca |
13753919 |
T |
|
| Q |
105 |
aaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgttt |
204 |
Q |
| |
|
||||| |||| || |||| ||||||| || ||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
13753918 |
aaacatatttttcgaaaaatcttttttacccatgatctttagaagagtggtgatataagcattcaacaaattcgttcgtgtgataatcttgcagacattt |
13753819 |
T |
|
| Q |
205 |
ttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataaat |
304 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||| || || ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
13753818 |
ttacaaagtcactcctaagtaaagtttttgagaaacttgtacgaaggattggtcttcatcgcctgagagatattcgtcttcatgaggggaagaaataaat |
13753719 |
T |
|
| Q |
305 |
gtgttctgcact |
316 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
13753718 |
gttttctgcact |
13753707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 50252404 - 50252248
Alignment:
| Q |
59 |
atgcatcgctcagttgaaagaaggatacattaaaggagatcgaa-caaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtga |
157 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||||||| |||||||| |||||| |||||| |||||| |||||||| |||||| | ||||| |||| | |
|
|
| T |
50252404 |
atgcattgttcaattgaaagagggatacattaaagaagatcgaataaaaacaaatttctttaaaattgtttttcacccatgatttacagaaaagtggtaa |
50252305 |
T |
|
| Q |
158 |
tatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtc |
214 |
Q |
| |
|
| | |||| |||||||||| | |||| ||||||||||| | ||||||||||||| |
|
|
| T |
50252304 |
tgtatgcatgtaacaaattcgtttgtgttataatcttgcatacttttttacaaagtc |
50252248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 12659566 - 12659527
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
12659566 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
12659527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 16326094 - 16326055
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
16326094 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
16326055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 25691573 - 25691534
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
25691573 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
25691534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 30674079 - 30674040
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
30674079 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
30674040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 37209216 - 37209555
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37209216 |
attgtggtttatcctccgaaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
37209315 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37209316 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
37209415 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37209416 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
37209515 |
T |
|
| Q |
301 |
aaatgtgttctgcactcnnnnnnnccttcaccaaggtttt |
340 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
37209516 |
aaatgtgttctgcactctttttttccttcaccaaggtttt |
37209555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 21247182 - 21247498
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21247182 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
21247281 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21247282 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatattgcagat |
21247381 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21247382 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
21247481 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
21247482 |
aaatgtgttctgcactc |
21247498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 27680277 - 27679961
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27680277 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacaacatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
27680178 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27680177 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtaataatcttgcagat |
27680078 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27680077 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
27679978 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27679977 |
aaatgtgttctgcactc |
27679961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 12146480 - 12146304
Alignment:
| Q |
45 |
gaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaattctttttcactcatgatcttc |
144 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||||||| ||||| |||| || ||| || |||||||||||||| |
|
|
| T |
12146480 |
gaagataatattgcatgcattgcttagttgaaagaaggttacattaaaaaagatcgaactaaacatatttttcttaaaaaaaatt-cactcatgatcttc |
12146382 |
T |
|
| Q |
145 |
agaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaa |
222 |
Q |
| |
|
||||| |||||||||| | ||||||||||||| | || ||||||| ||||||||| |||| | |||||| ||||||| |
|
|
| T |
12146381 |
agaagaatggtgatataaacattcaacaaatttgttcatgtgatagtcttgcagaccttttcataaagtcactcccaa |
12146304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 15305365 - 15305280
Alignment:
| Q |
232 |
ttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| | ||| ||||||| |||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
15305365 |
ttgagaaacttgtattaaggattagtcttcgtcatcttagagataattgtcttcatgatggggagaaagtaaaatgttctgcactc |
15305280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 15485734 - 15485649
Alignment:
| Q |
232 |
ttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| | ||| ||||||| |||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
15485734 |
ttgagaaacttgtattaaggattagtcttcgtcatcttagagataattgtcttcatgatggggagaaagtaaaatgttctgcactc |
15485649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 2978888 - 2978572
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2978888 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
2978789 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2978788 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
2978689 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2978688 |
gtttttacaaagtcgctcccaagtaaagtttttgaaaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
2978589 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2978588 |
aaatgtgttctgcactc |
2978572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 21477014 - 21477330
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21477014 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacaacatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
21477113 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21477114 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcataaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
21477213 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||||| ||||||||||| | ||||| |
|
|
| T |
21477214 |
gtttttacaaagtcactcccaagtaaagtttttgagaaacttgtactaaaaattggtcttagtcgtctaaaagatatttgccttcatgagggtgggaaat |
21477313 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
21477314 |
aaatgtgttctgcactc |
21477330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 27 - 302
Target Start/End: Original strand, 39875330 - 39875605
Alignment:
| Q |
27 |
gatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaattct |
126 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39875330 |
gatgcaacaattatttatgaagataatattgcatgcattgctcagttgaaagaaggttacattaaaggagatcgaacaaaacacatttctcctaaattct |
39875429 |
T |
|
| Q |
127 |
ttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaagtaa |
226 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||| || ||||| || |
|
|
| T |
39875430 |
ttttcacgcatgatcttcagaagaacggtgatataagcattcaacaaattcggtcttgtgataatcttgcagatcttttcacaaagtcacttccaagcaa |
39875529 |
T |
|
| Q |
227 |
agtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataa |
302 |
Q |
| |
|
| ||||||| |||| ||| || |||||||||| | || || |||||| || | || |||||||||||||||| |
|
|
| T |
39875530 |
aatttttgaacaactgatacaaaaaattggtctttgtcgactcagagatggttatattgttgagggggagaaataa |
39875605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 304
Target Start/End: Complemental strand, 21587683 - 21587437
Alignment:
| Q |
58 |
catgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtga |
157 |
Q |
| |
|
||||||| ||| ||||||| | || |||||||||| |||| ||| |||||| |||||| | ||| ||||||||||||||| |||| ||||| | ||| |
|
|
| T |
21587683 |
catgcattgctttgttgaaaaagggttacattaaagaagattgaaaaaaacatatttcttctaaagtctttttcactcatgttctttagaagaacaatga |
21587584 |
T |
|
| Q |
158 |
tatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggt |
257 |
Q |
| |
|
||| ||||||||||||||| || || |||||||||||||| ||||||||||||| ||||||| | | ||||||| |||| ||| || | ||||| |
|
|
| T |
21587583 |
tatagacattcaacaaattcgttcttgagataatcttgcagacctttttacaaagtcactcccaaacatactttttgaacaactgatacaaaaatttggt |
21587484 |
T |
|
| Q |
258 |
cttcgccgtctaagagatatttgtcttcatgagggggagaaataaat |
304 |
Q |
| |
|
||| | ||||||||| || |||| || |||||||||||||||||| |
|
|
| T |
21587483 |
ctttgacgtctaagaaatggttgtattgttgagggggagaaataaat |
21587437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 47396355 - 47396508
Alignment:
| Q |
23 |
aatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaa |
122 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||| ||||||| |||||| ||||| | |||||||| ||||||| ||||||||||| |||||||||| | |
|
|
| T |
47396355 |
aatggatacaacaatcgtttatgaagataatacgacatgcattgctcagctgaaatatagatacattgaaggagaccgaacaaaacatatttctccaaga |
47396454 |
T |
|
| Q |
123 |
ttctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaatt |
176 |
Q |
| |
|
|| |||| || |||||||| |||| |||||||||| | |||||||||||| |
|
|
| T |
47396455 |
ttattttgaacaaatgatctttagaataatggtgatattaatattcaacaaatt |
47396508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 21883203 - 21883242
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
21883203 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
21883242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 38990606 - 38990918
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38990606 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
38990705 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38990706 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
38990805 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38990806 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
38990905 |
T |
|
| Q |
301 |
aaatgtgttctgc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38990906 |
aaatgtgttctgc |
38990918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 28518780 - 28519096
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28518780 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
28518879 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28518880 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
28518979 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28518980 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagatatatttgccttcatgagggggagaaat |
28519079 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28519080 |
aaatgtgttctgcactc |
28519096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 18535359 - 18535320
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
18535359 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
18535320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 31093327 - 31093288
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
31093327 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
31093288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25366320 - 25366004
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25366320 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
25366221 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25366220 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
25366121 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25366120 |
gtttttacaaagtcgctcccaagtatagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
25366021 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
25366020 |
aaatgtgttatgcactc |
25366004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 300
Target Start/End: Original strand, 17604285 - 17604554
Alignment:
| Q |
28 |
atgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaattctt |
127 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
17604285 |
atgcaacaattatttatgaagataatattgcatgcattgctcagttgaaag---gttacattaaaggagatcgaacaaaacatatttctcctaagttctt |
17604381 |
T |
|
| Q |
128 |
tttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaagtaaa |
227 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||| ||||||||||||||||| || ||| |||||||||||||| |||| |||||||| ||||||| | | |
|
|
| T |
17604382 |
tttcacgcatgatctttagaagaatggtgatataagcattcaacaaattcgttcttgtaataatcttgcagatattttcacaaagtcagtcccaagcaga |
17604481 |
T |
|
| Q |
228 |
gtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||| |||| ||| || || ||||||||| || || |||||| |||| || |||||||||||||| |
|
|
| T |
17604482 |
gtttttgaacaactgatacaaaaaagtggtcttcgtcgactcagagatggttgtattgttgagggggagaaat |
17604554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 25365841 - 25365731
Alignment:
| Q |
207 |
acaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataaatgt |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25365841 |
acaaagtcgctcccaagtatagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaataaatgt |
25365742 |
T |
|
| Q |
307 |
gttctgcactc |
317 |
Q |
| |
|
||| ||||||| |
|
|
| T |
25365741 |
gttatgcactc |
25365731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 16673288 - 16673327
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
16673288 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
16673327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 21171566 - 21171527
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
21171566 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
21171527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 23053758 - 23053719
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
23053758 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
23053719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 35264920 - 35264881
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
35264920 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
35264881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 34648308 - 34648271
Alignment:
| Q |
277 |
tttgtcttcatgagggggagaaataaatgtgttctgca |
314 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
34648308 |
tttgtctttatgagggggagacataaatgtgttctgca |
34648271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29185031 - 29185347
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29185031 |
attgtggtttatcctccggaagaatggatgaaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagaccg |
29185130 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29185131 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatgatgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
29185230 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29185231 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattgctcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
29185330 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29185331 |
aaatgtgttctgcactc |
29185347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25831040 - 25830724
Alignment:
| Q |
1 |
attgtggtttatcctccggaagaatggatgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcg |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
25831040 |
attgtggtttatcttctagaagaatggatgcaacaatcatttatgaagataatacagaatgcattgctcagttgaaagaaggatacattaaaggagaccg |
25830941 |
T |
|
| Q |
101 |
aacaaaacacatttctccaaaattctttttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||| || |
|
|
| T |
25830940 |
aacaaaacatatttctccaaaattctttttcacacatgatcttcagaagaatggtgatatcaacattcaacaaatccgttcgtgtgataatcttgcaaat |
25830841 |
T |
|
| Q |
201 |
gtttttacaaagtcgctcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25830840 |
gtttttacaaagtcactcccaagtaaagtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgttttcatgagggagagaaat |
25830741 |
T |
|
| Q |
301 |
aaatgtgttctgcactc |
317 |
Q |
| |
|
|| ||| |||||||||| |
|
|
| T |
25830740 |
aactgtattctgcactc |
25830724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 28 - 300
Target Start/End: Complemental strand, 14719906 - 14719637
Alignment:
| Q |
28 |
atgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaattctt |
127 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
14719906 |
atgcaacaattatttatgaagataatattgcatgcattgctcagttgaaag---gttacattaaaggagatcgaacaaaacatatttctcctaagttctt |
14719810 |
T |
|
| Q |
128 |
tttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaagtaaa |
227 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||| ||||||||||||||||| || ||| |||||||||||||| |||| |||||||| ||||||| | | |
|
|
| T |
14719809 |
tttcacgcatgatctttagaagaatggtgatataagcattcaacaaattcgttcttgtaataatcttgcagatattttcacaaagtcagtcccaagcaga |
14719710 |
T |
|
| Q |
228 |
gtttttgagaaacttgtactaagaattggtcttcgccgtctaagagatatttgtcttcatgagggggagaaat |
300 |
Q |
| |
|
|||||||| |||| ||| || || ||||||||| || || |||||| |||| || |||||||||||||| |
|
|
| T |
14719709 |
gtttttgaacaactgatacaaaaaagtggtcttcgtcgactcagagatggttgtattgttgagggggagaaat |
14719637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 26248945 - 26249006
Alignment:
| Q |
137 |
tgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcag |
198 |
Q |
| |
|
|||||||||||| ||| |||||| |||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
26248945 |
tgatcttcagaataatgatgatataagcactcaacaaatttgttcgtgtgataatcttgcag |
26249006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 340673 - 340634
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
340673 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
340634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 8247889 - 8247928
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
8247889 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
8247928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 28106382 - 28106468
Alignment:
| Q |
136 |
atgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaa |
222 |
Q |
| |
|
|||||||||||||| | | |||||| | ||||||||||| | |||||||||||||||||| | |||| |||||||| ||||||| |
|
|
| T |
28106382 |
atgatcttcagaagaaagatgatatacactttcaacaaatttgatcgtgtgataatcttgcaaactttttcacaaagtcactcccaa |
28106468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 34111537 - 34111330
Alignment:
| Q |
28 |
atgcaacaataatttacgaagataatacagcatgcatcgctcagttgaaagaaggatacattaaaggagatcgaacaaaacacatttctccaaaattctt |
127 |
Q |
| |
|
|||||||||| ||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
34111537 |
atgcaacaattatttatgaagataatactacttgcattgctcagttgaaagaaggttacattaaaggagatcgaacaaaacataattgtccaaaaaaaaa |
34111438 |
T |
|
| Q |
128 |
tttcactcatgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaagtaaa |
227 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| | | |
|
|
| T |
34111437 |
attcacgcatgatcttcagaagaatggtgatataagcattcaacaaattcgttcttgtgataatcttgcagatcttttcacaaagtcactcccaagcaga |
34111338 |
T |
|
| Q |
228 |
gtttttga |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
34111337 |
gtttttga |
34111330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 16243575 - 16243489
Alignment:
| Q |
137 |
tgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaag |
223 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||||||||| | |||||| |||||||||| || |||| |||||||| |||||||| |
|
|
| T |
16243575 |
tgatcttcagaagaatgatgatataagctttcaacaaatttgttcgtgttataatcttgccgaccttttcacaaagtcactcccaag |
16243489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 16423279 - 16423365
Alignment:
| Q |
137 |
tgatcttcagaaggatggtgatatcagcattcaacaaattcggtcgtgtgataatcttgcagatgtttttacaaagtcgctcccaag |
223 |
Q |
| |
|
||||||||||||| ||| |||||| ||| |||||||||| | || ||| ||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
16423279 |
tgatcttcagaagaatgatgatataagccgtcaacaaatttgttcatgttataatcttgcagaccttttcacaaagtcactcccaag |
16423365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 19437916 - 19437877
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
19437916 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
19437877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 43287769 - 43287730
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
43287769 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
43287730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 13805 - 13844
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13805 |
ttgtctttatgagggggagaaataaatgtgttctgcactc |
13844 |
T |
|
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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 111654 - 111693
Alignment:
| Q |
278 |
ttgtcttcatgagggggagaaataaatgtgttctgcactc |
317 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
111654 |
ttgtctttatgagggggagacataaatgtgttctgcactc |
111693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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