View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1914_low_16 (Length: 334)

Name: NF1914_low_16
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1914_low_16
NF1914_low_16
[»] chr3 (13 HSPs)
chr3 (17-322)||(3753719-3754024)
chr3 (17-260)||(4142749-4142992)
chr3 (17-260)||(4158559-4158802)
chr3 (139-257)||(3745168-3745286)
chr3 (160-265)||(967861-967966)
chr3 (145-265)||(2679178-2679298)
chr3 (135-257)||(2651142-2651264)
chr3 (145-263)||(2687085-2687203)
chr3 (153-241)||(803972-804060)
chr3 (160-234)||(1003714-1003788)
chr3 (160-234)||(1021711-1021785)
chr3 (160-266)||(1937720-1937826)
chr3 (126-202)||(1891770-1891846)
[»] chr5 (1 HSPs)
chr5 (89-257)||(11081379-11081547)
[»] chr8 (1 HSPs)
chr8 (133-266)||(19727108-19727241)
[»] chr1 (1 HSPs)
chr1 (157-233)||(25611754-25611830)
[»] chr4 (1 HSPs)
chr4 (167-268)||(20020552-20020653)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 3754024 - 3753719
Alignment:
Q  17 agttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgaccaacggctgtagtttaggaagtggaggttccgagc 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3754024 agttagaggttatgtctgtgaaaatagagtcgattggataagatgtgagaatatacttgtgtgaccaacggctgtagtttaggaagtggaggttccaagc 3753925  T
Q  117 gatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggt 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753924 gatggacacactgagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggt 3753825  T
Q  217 aacctacataggatttctggaatgacgtcgtaaggaagagttggaagtgaatggttataacggcggtgattgggtgaaggtggtacaaccgagagctgat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753824 aacctacataggatttctggaatgacgtcgtaaggaagagttggaagtgaatggttataacggcggtgattgggtgaaggtggtacaaccgagagctgat 3753725  T
Q  317 tgtgat 322  Q
    ||||||    
T  3753724 tgtgat 3753719  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 4142749 - 4142992
Alignment:
Q  17 agttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgac-caacggctgtagtttaggaagtggaggttccgag 115  Q
    ||||||||||||||||| |||||  |||||| | |||||||||||||||||| |||||   |||  ||  ||| ||||||| ||||||||||||||||||    
T  4142749 agttagaggttatgtctgtgaaatcagagtccagtggataagatgtgagaatgtactttcttgagtcataggc-gtagtttcggaagtggaggttccgag 4142847  T
Q  116 cgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccgg 215  Q
     | ||||||||| |||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4142848 tggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactgg 4142947  T
Q  216 taacctacataggatttctggaatgacgtcgtaaggaagagttgg 260  Q
    || |||||||| ||||||||||||||||||| |||||||||||||    
T  4142948 tagcctacatatgatttctggaatgacgtcggaaggaagagttgg 4142992  T

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Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 4158559 - 4158802
Alignment:
Q  17 agttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgac-caacggctgtagtttaggaagtggaggttccgag 115  Q
    |||||||| |||||||| |||||  |||||||| ||| |||||||||||||| |||||   |||  ||  |||  |||||||||||||||||||||||||    
T  4158559 agttagagtttatgtctgtgaaatcagagtcgagtgggtaagatgtgagaatgtactttcttgagtcataggca-tagtttaggaagtggaggttccgag 4158657  T
Q  116 cgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccgg 215  Q
     | ||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4158658 tggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccgg 4158757  T
Q  216 taacctacataggatttctggaatgacgtcgtaaggaagagttgg 260  Q
    || |||||||| ||||||| ||||||||||| |||||||||||||    
T  4158758 tagcctacatatgatttctagaatgacgtcggaaggaagagttgg 4158802  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 3745286 - 3745168
Alignment:
Q  139 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaa 238  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||    
T  3745286 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaa 3745187  T
Q  239 tgacgtcgtaaggaagagt 257  Q
    |||||||| ||||||||||    
T  3745186 tgacgtcggaaggaagagt 3745168  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 967966 - 967861
Alignment:
Q  160 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttg 259  Q
    |||||| ||||||| |||||||| |||||||||||| | | || || |||||||| || ||||||||| |||||||||||||  ||| |||||||||| |    
T  967966 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagtcg 967867  T
Q  260 gaagtg 265  Q
    ||||||    
T  967866 gaagtg 967861  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 2679178 - 2679298
Alignment:
Q  145 aattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgt 244  Q
    |||||||||||||| || ||| | |||||||||||||| |||||||||| | |||||| ||| || ||| |||||||| | || || ||||| |||| ||    
T  2679178 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgaggt 2679277  T
Q  245 cgtaaggaagagttggaagtg 265  Q
    || |||||||||| |||||||    
T  2679278 cgaaaggaagagtgggaagtg 2679298  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 2651142 - 2651264
Alignment:
Q  135 tttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 234  Q
    |||| ||| ||||||  ||||||| || ||| ||||||||| |||||| |||||||| | | ||| || || ||||||||||||||||| ||| ||||||    
T  2651142 tttcatgatgaatttgtgatcggagataagagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttct 2651241  T
Q  235 ggaatgacgtcgtaaggaagagt 257  Q
     |||| | |||| ||||||||||    
T  2651242 tgaataaggtcgaaaggaagagt 2651264  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 2687085 - 2687203
Alignment:
Q  145 aattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgt 244  Q
    |||||||||||||| || ||| | |||||||||||||| |||||||||| | |||||| ||| || ||| | |||||| | || || ||||| |||| ||    
T  2687085 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgcaacctagacagtatatctgggatgaggt 2687184  T
Q  245 cgtaaggaagagttggaag 263  Q
    || ||||||| || |||||    
T  2687185 cgaaaggaagggtgggaag 2687203  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 803972 - 804060
Alignment:
Q  153 atcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatga 241  Q
    |||| |||||||| ||||||||||||||||||| ||||||| | |||| | |||||| || ||||||| ||| |  ||||||| |||||    
T  803972 atcgcatattagagaattccatgacttgcaaacgcatcggagttgaagtaagaacttcacaggtaaccaacacaaaatttctgcaatga 804060  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 1003788 - 1003714
Alignment:
Q  160 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 234  Q
    |||||||||||||||||||||||| | ||||| | | |||||| || ||| || |||||||||  ||||||||||    
T  1003788 attagaaaattccatgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaacctagctaggatttct 1003714  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 1021785 - 1021711
Alignment:
Q  160 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 234  Q
    |||||||||||||||||||||||| | ||||| | | |||||| || ||| || |||||||||  ||||||||||    
T  1021785 attagaaaattccatgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaacctagctaggatttct 1021711  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 1937720 - 1937826
Alignment:
Q  160 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttg 259  Q
    |||||| ||||| ||||||||||||| || |||||||  |||| ||  || |||| || |||| | ||||||||||||||||  ||  |||||||||| |    
T  1937720 attagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagagtgg 1937819  T
Q  260 gaagtga 266  Q
    |||||||    
T  1937820 gaagtga 1937826  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 1891770 - 1891846
Alignment:
Q  126 acggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 202  Q
    |||||| |||||| || |||| || | |||||| |||||| |||||||||||||||| ||| |||||| | ||||||    
T  1891770 acggaggtgtttcatggcgaacttggaatcggagattagagaattccatgacttgcagacagatcggagttgaagga 1891846  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 11081547 - 11081379
Alignment:
Q  89 tgtagtttaggaagtggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacaca 188  Q
    |||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||||| ||||| ||||||| | |||| || ||||||||||||||    
T  11081547 tgtagtttaggaagtggaggtttcgagtggcggacacacggagttgtttcttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacaca 11081448  T
Q  189 tcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagt 257  Q
    | ||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  11081447 ttggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagagt 11081379  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 19727241 - 19727108
Alignment:
Q  133 tgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggattt 232  Q
    ||||| ||| |||||||  |||| || |||||| ||||| | ||||||||||||||||||||  | | || ||| || || |||| ||||| ||| ||||    
T  19727241 tgtttgttggcgaatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaattt 19727142  T
Q  233 ctggaatgacgtcgtaaggaagagttggaagtga 266  Q
    |||||||||  ||| |||||||||| ||||||||    
T  19727141 ctggaatgagatcgaaaggaagagtaggaagtga 19727108  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 25611754 - 25611830
Alignment:
Q  157 gatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttc 233  Q
    ||||||||| |||||||||||||||| || || | |||| |||||| |||||| ||||| | |||||| ||||||||    
T  25611754 gatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctacaaaggatttc 25611830  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 20020552 - 20020653
Alignment:
Q  167 aattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtga 266  Q
    |||||||||| || || |||||||| | | |||||| || ||| || ||||||||||| || ||||||  ||||| |||| |||||||| | ||||||||    
T  20020552 aattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgaggtcgaaaggaagaatgggaagtga 20020651  T
Q  267 at 268  Q
    ||    
T  20020652 at 20020653  T

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