View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_18 (Length: 294)
Name: NF1914_low_18
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_18 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 59006 - 59281
Alignment:
| Q |
1 |
aaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59006 |
aaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctact |
59105 |
T |
|
| Q |
101 |
tggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59106 |
tggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctg |
59205 |
T |
|
| Q |
201 |
atgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatg |
276 |
Q |
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| T |
59206 |
atgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatggatg |
59281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 8690187 - 8689923
Alignment:
| Q |
1 |
aaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctact |
100 |
Q |
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||||||| ||||||||||| || ||||||||||| ||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
8690187 |
aaacctgctggaaggtgctaagagatgccaagatggaacctccgatccagacactgtattttctctcaggtggtgcaaccaccttgatcttcatgctact |
8690088 |
T |
|
| Q |
101 |
tggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctg |
200 |
Q |
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| T |
8690087 |
tggggccaaagcagaaatttccttgctcattctatcagcaatgcctgggaacatggtagttcctcctgaaagcacaatgttaccgtacaagtctttcctg |
8689988 |
T |
|
| Q |
201 |
atgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcc |
265 |
Q |
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| T |
8689987 |
atatcaacatcgcacttcatgatggagttgtatgtggtctcgtgaatgcctgctgcttccattcc |
8689923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 37050189 - 37050415
Alignment:
| Q |
3 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
102 |
Q |
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| T |
37050189 |
acctgttggaaagtgctgagagatgccaaaatggaacctccaatccagacactgtacttcctctctggtggtgctacaaccttgattttcatgctactag |
37050288 |
T |
|
| Q |
103 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
202 |
Q |
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| T |
37050289 |
gagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttgaaccaccactcaacacgatgttaccatagagatccttcctaat |
37050388 |
T |
|
| Q |
203 |
gtcaacatcacatttcattatggagtt |
229 |
Q |
| |
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|||||||||||| ||||| || ||||| |
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| T |
37050389 |
gtcaacatcacacttcatgatcgagtt |
37050415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 41388764 - 41388493
Alignment:
| Q |
3 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
102 |
Q |
| |
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|||||||| || ||||| || || || |||||||| |||||||||||||||||||| |||||||| || || || |||||||||||||||||||| |||| |
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| T |
41388764 |
acctgttgaaaagtgctaagagaagctaagatagagccaccaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttg |
41388665 |
T |
|
| Q |
103 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
202 |
Q |
| |
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| || || || | ||| |||||||||||||| |||||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||| || ||||| |
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| T |
41388664 |
gggccaacgcggtaatttccttgctcattctgtcagcaataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgat |
41388565 |
T |
|
| Q |
203 |
gtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccattcccaccatgga |
274 |
Q |
| |
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| T |
41388564 |
atcaacatcacacttcatgattgagttgtatgtcgtctcgtgaattccaacagcttccattccaaccatgga |
41388493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 262
Target Start/End: Original strand, 1261854 - 1262113
Alignment:
| Q |
3 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
102 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
1261854 |
acctgttgaaaggtactgagtgatgccaagatagacccaccaatccagacactgtacttcctctcaggaggtgcaaccaccttgattttcatgctacttg |
1261953 |
T |
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| Q |
103 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
202 |
Q |
| |
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| || | ||| || ||||||||||| | |||||||| |||||||||||||| | |||||| || ||||| || ||||| || || ||||| || |
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| T |
1261954 |
gagcaagagcactgatttccttgctcatacggtcagcaattccaggaaacatggtagaacctccactaagcacaatatttccatatagatccttcctaat |
1262053 |
T |
|
| Q |
203 |
gtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttccat |
262 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || ||||| ||||| | ||||||||| |
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|
| T |
1262054 |
atcaacatcacacttcatgatggagttgtatgtagtttcatggattccagtagcttccat |
1262113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 68800 - 68640
Alignment:
| Q |
3 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
102 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || || |||||||||||||| ||||| ||||| || ||||| |||||||| || ||||||||||||| |
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| T |
68800 |
acctgttggaaggtgctgagggaagccaaaatggagcctccaatccagacactatacttcctctctggtggtgcaaccaccttaattttcatgctacttg |
68701 |
T |
|
| Q |
103 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacc |
163 |
Q |
| |
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|||| ||||| | |||||||||||||| |||||||||||||| || ||||| || ||||| |
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|
| T |
68700 |
gtgccaatgctgtgatctccttgctcatcctatcagcaatgccggggaacatagtcgtacc |
68640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 42 - 265
Target Start/End: Original strand, 43646914 - 43647137
Alignment:
| Q |
42 |
ccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||| || || || || ||||| ||||||||||| || || || | |||| |||||||||||||| | ||||||| |
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| T |
43646914 |
ccaatccagacactgtactttctctctggtggagccacaaccttaatcttcatgctgctaggagccagggcagtgatctccttgctcatacggtcagcaa |
43647013 |
T |
|
| Q |
142 |
tgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctc |
241 |
Q |
| |
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| ||||| ||||| |||| ||| || || |||||||| || ||||| || || ||||| || |||||||| ||||| || |||||||| |||||||| |
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| T |
43647014 |
taccagggaacatagttgaaccaccactaagaacaatgttgccgtacagatcctttctgatatccacatcacacttcatgatagagttgtaggtggtctc |
43647113 |
T |
|
| Q |
242 |
atgaattcctgcagcttccattcc |
265 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
43647114 |
gtgaattccagcagcttccattcc |
43647137 |
T |
|
Back To:
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