View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_23 (Length: 248)
Name: NF1914_low_23
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 42314434 - 42314291
Alignment:
| Q |
1 |
caaaggatagaatttgtgtgttggcaagtccttagatgaaagactagttccctaacaatccaaaaaagaccaataattatacataaatccctttcaatca |
100 |
Q |
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| T |
42314434 |
caaaggatagaatttgtgtgttggcaagtccttagatgaaagactagttccctaacaatccaaaaaagaccaataattatacataactccctttcaatca |
42314335 |
T |
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| Q |
101 |
aagttatgtttagaaattttaaattgagcgagaaatacttatac |
144 |
Q |
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| T |
42314334 |
aaattatgtttagaaattttaaattgagcgagaaatacttatac |
42314291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 42314200 - 42314105
Alignment:
| Q |
141 |
ataccttaaagtgcttgttatcacctagtgtaacataactggcgaagtctctatcaattgtgctagcagcaaccgtgaataaccaaggtgccacgt |
236 |
Q |
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| T |
42314200 |
ataccttaaagtgcttgttatcacctagtgtaacataactggcgaagtctctatcaattgtgctagcagcaaccgtgaataaccaaggtgccacgt |
42314105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 42734989 - 42734943
Alignment:
| Q |
172 |
aacataactggcgaagtctctatcaattgtgctagcagcaaccgtga |
218 |
Q |
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| T |
42734989 |
aacataacttgtgaagtctctatcaattgtgcttgcagcaactgtga |
42734943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 24267121 - 24267072
Alignment:
| Q |
185 |
aagtctctatcaattgtgctagcagcaaccgtgaataaccaaggtgccac |
234 |
Q |
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| T |
24267121 |
aagtttctatcaattgtgctagcagcaacactgaacaaccaaggcgccac |
24267072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 31050903 - 31050947
Alignment:
| Q |
184 |
gaagtctctatcaattgtgctagcagcaaccgtgaataaccaagg |
228 |
Q |
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| T |
31050903 |
gaagtctctatcaattgtactagcagcaacagtgaacacccaagg |
31050947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 31063368 - 31063412
Alignment:
| Q |
184 |
gaagtctctatcaattgtgctagcagcaaccgtgaataaccaagg |
228 |
Q |
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||||||||| |||||||| ||||||||||| ||||||| |||||| |
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| T |
31063368 |
gaagtctctgtcaattgtactagcagcaactgtgaatacccaagg |
31063412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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