View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_25 (Length: 238)
Name: NF1914_low_25
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 37404739 - 37404960
Alignment:
| Q |
17 |
acatacttcaatggtaagtaaaattacttgcttatcaaaattatatgggttagaatgtacaaggtaagataaaatcaattcaactatgattacttctcaa |
116 |
Q |
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| T |
37404739 |
acatacttcaatggtaagtaaaattacttgcttatcaaaattatatgggtcagaatgtacaaggtaagataaaatcaattcaactatgattacttctcaa |
37404838 |
T |
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| Q |
117 |
aatgatgacccaggttgtgcaactaaggatcaatttcactccatgaaccatattttaagccttatctcattaatgaatgtttggagtcataaggtacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37404839 |
aatgatgacccaggttgtgcaactaaggatcaatttcactccatgaaccatattttaagccttatctcattaatgaatgtttggagtcataaggtacatg |
37404938 |
T |
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| Q |
217 |
cctacgttgacaaagctctaat |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
37404939 |
cctacgttgacaaagctctaat |
37404960 |
T |
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