View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1914_low_27 (Length: 237)
Name: NF1914_low_27
Description: NF1914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1914_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3745417 - 3745633
Alignment:
| Q |
1 |
ttctatgatgtcaaatatttttctattttaaaaaatggattgaagtcttaaaagattacagtgagtgatattttaaaggttgaaaagacacaaatcaaat |
100 |
Q |
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|||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
3745417 |
ttctattatatcaaatatttttctatgttaaaaaaaggattgaagtcttaaaagattacagtgagtgatattttaaaggttgaaaagacaaagatcaaat |
3745516 |
T |
|
| Q |
101 |
tgcaccatagtccaaacactcatcattgaagaaaacaacactaccttcgtagttgatacaaattaaatttaactccatctcaaaattaaacatggctcaa |
200 |
Q |
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|||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3745517 |
tgcaccatagtccaaaaaatcatcattgaagaaaaccacactaccttcgtagttgatacaaattaaatttaactccatctcaa----aaacatggctcaa |
3745612 |
T |
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| Q |
201 |
atggaaggattgtctaattct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3745613 |
atggaaggattgtctaattct |
3745633 |
T |
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